DreINT0063352 @ danRer10
Intron Retention
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18829175-18830484:-
Coord C1 exon
chr12:18830379-18830484
Coord A exon
chr12:18829298-18830378
Coord C2 exon
chr12:18829175-18829297
Length
1081 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCTCATTTCCCTTTACCCAGTCT
3' ss Score
5.34
Exon sequences
Seq C1 exon
GAGCGAATTCCATGGGAGTGAATGGGGCAGTTGGTGGCCAGCCTCAGAATCAGCAATCTAGCCTTCTCCAGGATACAATGCTGCATCTGAACATGAATTCACAAAG
Seq A exon
GTAAACAAGCCCTTAGGTACATTTTCTAGGGGACATGAACTAGGTCTTCTCACTTAACTAAGTTCTACAGAAATATTTGACAGTAATATTTGCTGTATTCCAGTACAGTCAGCACAACATTATTTTTTAAAATTTTAATCTTCCAGAAAATCCAGTCAAATTTTTCCTTATTTGTAGACAAACCTGCAGTAAAAAAGTGAACAAAGGAGCAAAGTCATATTAGGTCTGGAATCTCAAAAATGTGCTGATCCAATTTTTTCCAAATGCTAGGATCAGAAGTCACAACCACAACTTACACTGCACATGATACATTTTTATTGGTCAAACTTTACAATAAAGTTCATTAGTTAATGTTAATTAATGCATTTACTAACATGATCAAACAATGAACAATACATTTACTACTGGATTTGTTCATGTTAATTAACGTTAGTTAATGAAAATAGAGTTATTCATTGTTAGTTCATGTTAACTCATGGTGCGTTAACTAATGTTAACAAGCATGGGCTTGAATGTTAATAATGCATTAGTAAATGTTTAATTATGTTTAATAAATGTTGTACATGTGTTGTTCATGATTAGTTCATGTTAGTAAATGCATTAACTAATGAACCTTATTATAAAGTGTTACCTTTTTATTTGAACCTTTCTACATAGACCTGTGTTTGGTTGTCATTGTTTACCTAATACAACCTGAGTCTGTGGGCAAAGCTGCACAGGCAGTGATATAGAAGCATCAACTGTGAAGGTGGAGTTTAGTCGCACTATTACCTAAAATTAATCTACATCATGCAACCAGCCAATTTTGCAGACTTGCTTCAATAAAAGCTGTTTTAAGACTAACTAAGTTTTGAGTTCTGTAATTTAACAGACGCTTTTAAACTACACTGACTTCTTTTATACCAAAAGGTCATGGCAATTTAGATTTTTCTGTTCATTACCGCTTTAAACTAGTCGCCATTCTCTCCTCTCATGTTAGAAAACCTACCTATCAGTCCACTGCTGCAGGTATCTGTCAGTTTTTATAAACTCACAAACGCATGTATGTCCTCAATTGTTTCCCTCATTTCCCTTTACCCAG
Seq C2 exon
TCTGATAAATGACAGTGGTGTGGGGTCTCTGCCAATGGCCAACCCAGCTGCCAGCGGTAGCATGAGGAAGAGCTGGCATGAGGACATCACCCAGGATCTGCGCAACCACCTGGTACACAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666:ENSDART00000172574:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217211=KIX=PU(25.9=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAATTCCATGGGAGTGA
R:
GTGGTTGCGCAGATCCTGG
Band lengths:
215-1296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]