BtaINT0056832 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33502391-33503816:+
Coord C1 exon
chr13:33502391-33502539
Coord A exon
chr13:33502540-33503656
Coord C2 exon
chr13:33503657-33503816
Length
1117 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
ACCTTTTCATACCATTTCAGGTA
3' ss Score
11.01
Exon sequences
Seq C1 exon
AATCGCAAAAATGATGAAGCCTCTTATGAAAAAATGCTTAAGCTGCGTCGAGACCTAAGCCGGGCTGTTACTATTCTAGAGATGATAAAAAGAAGAGAAAAGAGTAAAAGAGAGCTATTGCACTTAACACTGGAAATTATGGAAAAGAG
Seq A exon
GTAAAGTATGTTTTAATAGCATGAGAAGCACAGCACCATTAGAATTTTGTGTAGAGGTCATTTATTTCCTAAGAAGTTTTCTGTAACTCCAGAAATACATTCTTTTAATAATAGTTAGAGACTGCTGAAATATGTGGTGTTGATGTACTTTCTGTAATTTTACATGCCTTCCTCTCTCTAGTTTCACTTTTAAAGTGACTGGGTTCAGTAAAACTGTTATGCAGGATACTTCCATTTCAAAATCATTTTCTTTTAGACTTGAGTTAGTGCAGAGCCATGAGGAAGAGAACATTTGTCACTTCTAAAGTTTTTATTTTGTTTACTAAATGATACTGAATTTTTTTTTAACACATGCTGAGATTTTTTAACAGGAAAGTATAAAACAGGGATGGGGGAAAGGCCCGTATTCTTAATACCTAGATAATCCTTCAGTGTGGCTTCCCCGGTGGCTCAGCAGTAAAGAATCCACCTGCAGTGCAGGAGACGCGGGTTTGACCCCTGGGTTGGGAAGATCATGTGAAGGAGGGCATGGCATTCTACTCCAGAATTGTTGCCTGAAAAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTTCATGGAGTTGCAAAAGAGTTAGACACGACTAAGCGACGAAATACACACACACAATCCTTCAGCAGAAGCATGGTGAAAACTTCAGGCTACACTCCCCTGTTTCCAGGTCCCTATTCCCAAAGGAAATAACTATTCAATTTCTTATGATTCATTTCAGAAAAATTAGTTTTATGGCACAGGCAACTCAAATTAGCAGAAAGTTCCTCAGTACCATTTCAGGCATGAATTTCAACATCTCCACCAAATCTGCCACCAAAATTGCTATGTTAAAATTAAATCCCCCTCTCCCCCACCATGGTTATCTATTAATGGTGGCATGATAAAGCCATAAGCCAAAAAGTAAAAGAAGCAATAGGAATTATGTAATCTTTACTTTTAATAAACATTCATCAGGTAGTTTACCTGTAATCTTACCTTAAGTTTCATCAGGGTTTATAGTTAATATCTGAGTTAGTTATTAGTTGTCATGACGGTAAGTGCTTACAAGAACTAACTCTATAAACCTTTTCATACCATTTCAG
Seq C2 exon
GTATAATTTGGGTGACTACAGTGGGGAGATCATGTCTGAGGTCATGGCTCAGAGGCAGCCAGTGAAGCCCACATACACCATCCCCCTCATCCCCATCGCCAACAGCAGTCAGTTCAAACACCAGGAGGCGATGGACGTGAAGGAATTTAAAGTTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGCAAAAATGATGAAGCCTCT
R:
ACTTTAAATTCCTTCACGTCCATCG
Band lengths:
302-1419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development