RnoINT0055456 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57319997-57321338:-
Coord C1 exon
chr17:57321190-57321338
Coord A exon
chr17:57320157-57321189
Coord C2 exon
chr17:57319997-57320156
Length
1033 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
AGTTCCCTTTGTAATTTCAGGTA
3' ss Score
7.33
Exon sequences
Seq C1 exon
AATCGCAAAAACGATGAAGCCTCCTATGAGAAAATGCTTAAGCTGCGCCGGGATCTCAGCCGGGCTGTCACCATCCTGGAGATGATCAAGAGACGTGAGAAAAGTAAACGGGAGCTGCTGCACCTGACACTGGAGATTATGGAGAAGAG
Seq A exon
GTGAAGCAAGTTCTCAGTGCCAGGACCATCGTGTTTTCCTAATCCGAAGTTTCAGAAACATTTTCTTTAATAGAGACTGTGGGTTAAACTGTGAAATTTTATACACAATTCTGTCTTAATTTTCTTGCAAGGTGATTGGGCTCACTAACAGCACATCAGGTGTTTCTATTGAGAGATATTTTATTATTTTTGAGTTGTGTGGCTGTATGAGAGTGTGTGTGACTGCTAGTAGTTTATTTGTAGTGTTTTGTGGGTTTGTGGGGGATTTTTAGTACTAGAGACAAAACCCAGGGCCCTGCACAACCCAGGCAAACATTTCCCTGAGCTCCCTCAGCACCATGATACTCAGATGACCACTTAGTGCCATGCACATGACATGTACATAAAAGCTCGTTCTCAAGGCCCTGCTTCTCAGCTCCTCCCCCCCCCCAAAAAAAAACACACTTAAATTTCTTATGATTCTTTCATAAAAAAGAAAGTACTTTTGTAGCACAGACAGTCCTAATTGGCAAGGTGTTTTTGGCACTGCTTGAGGCATTTCAGCCCTGAGCCGAGCTAAGACTGGACGGCTCAGGCGTTAGCCCCATCAGTAGAGTGCGCCTGTCAAGCATGCAGCTCTGGGTTTGAGCCAGGTGAGCCAGGCATGGTGGCTCGTGCCTGCAGGAGGTGCTTCAGAGGTTCTCTTGTAAAGAACCTGGTTTGATGCTCAGTACCCTGTGACATCTAACGACTTTCTGTTAAGCTTAGGTCCAGGGGTCCAGTATCCTCTCTGGCCACATGGGCATGGCACACACATGGTGCACAGACATACAAGTCGGCAACGTACCCATATGCATTTAGGGCCACTGTTGAGTAGCACGTGCGTTGAAAGTCGTATGTTACCCCACCTACAGCAGGCACACACGGTACCCGAGGAGGTGGCTGTTGAGTGAGTGAGTGAGTTAGTTAGTTGGACTGTAGATCATTTCACAGTGTGTATGGAAGCATCTCATTGTACTCTGTGTATAGCTTAAAGTTCCCTTTGTAATTTCAG
Seq C2 exon
GTATAATTTAGGTGACTACAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACCTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGACGTCACGGATGCGAAGGAGTTCAAAGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAAAACGATGAAGCCTCC
R:
TGTTAACTTTGAACTCCTTCGCA
Band lengths:
304-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]