MmuINT0058037 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6452233-6453657:-
Coord C1 exon
chr18:6453509-6453657
Coord A exon
chr18:6452393-6453508
Coord C2 exon
chr18:6452233-6452392
Length
1116 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
TTTCCTTTGTGTAATTTCAGGTA
3' ss Score
9.8
Exon sequences
Seq C1 exon
AACCGTAAGAATGATGAAGCCTCATATGAGAAAATGCTCAAGCTGCGCCGCGATCTCAGCCGGGCTGTCACCATCCTGGAAATGATCAAGAGACGGGAGAAGAGTAAACGGGAGCTGCTGCACCTGACCCTGGAAATCATGGAGAAGAG
Seq A exon
GTGACCCTCGCGTGCAGAGCGCTAGGACCGAGACAGGGCCATCATGGGTTTCCCAATTAGCTGAAATTTTAGAAATAGTTTCTTTAGTAGAGACCATGGGTTATACTTTGTGAAATTTTATACACAATTCTGTCTTCATTTTCTCAGGAGATGATTGGGTTCACTAACAGGTGTTTGTTTCTATTGAGAGATATTTTATTCTTTTTGAGTTGTGTGTGGTTATGAGGCAGGGTGAGAGGGTGTGTTGAATAGTAGTAGTTTATTTGGGGTGTTTTGTGGTTTTATGGGGGATTTTTAGTACTAGAGACAAAACCCAGGGCCTCGTACAGCCCAGGCAGACATTTCCCTGAGCTATCCCAGCACCATGACATTCAGATGACCACGTAGTGACAGTGAACATGACATGCACATAAAAGCTAGTTCTCAAGGCCCTGCTTCTCAGGTCCTATCCCCCCCCCACCCCCCACTCCCAAAAAAATCCACTTAAATTTCTTGTGATTCTTTCAGGAGAAAAAAGACAACACTAATTGGCAGGGTAGCTTTTGGCTCTACTTGAGGCATTTCAGCCTTGGGATTTTCCCCGCAGTCACTGTGTGCCGAGATAAGGCTAAATACTCCATCAATAGAGAGCATGGCTGTTGGGCGTGAAAGCTCTGAGTTTGAGCCAGATGGCCCAGGTATCGTGGCTTATGCCTGTAGTAGGTAGTAGAAACAAAAGGACCAAGAATTCAAGGGGAGAGCCTTAAGGATGGCTTAGAGGTTATTCTTTCAAAGAACCTGGGTTGGATTCTCAGCACCTATGTGGCATCTGACAACTTTCTGTTAAGTTTAGGTCCAGGGGAGTCCAGTATCCTCTCTGGCCTCATGGGCAAGAAGGCACACACATGGTATACAGACATACAAGTAGGCAAAATACCCATATGCATTCAGGGTTACTGTTGAATACCTAGTATATTGAAAGCCTTCCTAAGTGATTTTATCCCACCTACAGCAGGCACACATGTATCTGAGGATGTGGCTGTTGAATTAGTTGGACTGTACCTCATTTCACAGTGTTTATGGAAGCATCTCATTGTATTCTGTGTCTATCTTAAAGTTTCCTTTGTGTAATTTCAG
Seq C2 exon
GTATAATTTAGGTGACTATAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACTTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGATGCCACGGACTCGAAGGAGTTCAAAGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTAAGAATGATGAAGCCTCA
R:
TTGTTAACTTTGAACTCCTTCGAG
Band lengths:
307-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types