GgaINT0101656 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14065584-14067163:+
Coord C1 exon
chr2:14065584-14065732
Coord A exon
chr2:14065733-14067003
Coord C2 exon
chr2:14067004-14067163
Length
1271 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTATTATCTTCTGATTACAGGTA
3' ss Score
8.6
Exon sequences
Seq C1 exon
AATCGAAAAAATGATGAAGCATCCTATGAGAAGATGCTTAAACTGCGTCGAGACCTGAGTCGTGCAGTAACCATCCTGGAGATGATAAAGAGAAGGGAAAAAAGCAAGAGGGAGTTGCTGCATTTAACACTGGAAATTATCGAAAAGAG
Seq A exon
GTAATGTTTATTGCAAATGTGCTACAGAAAGCTTTGGAAACTGCTGTAGATTTCAATTCCCATGAATATTTTATAAAATATGAGAGATTATCTTAGCAGAAGAATTGAAATTTGTGTTTTGTTAACAATATAGCATGTTCTCATTTATGACTCTGAAGAGCAAAATGGAATTTAGGGAGTTACTCGTTGTGGAAAAAGCAGCCTGCCACCTTCATGTGCTTTGTTCTATTATGTGTATTCTTAGATTTGTATCTTATGTCCTGTGTATTACGTGGGAAGGAAGATCATAGCTTCAGGTAAATTCCTTTCAAAATTGTTAGGTTAGCTGCATAGATTAAGGAATATCCTCTTGAAGAAAATGAACAGGAATTTCATACAACTTAATGTACTGTTCTGTGAGTTGTTTTTAACTTGTGTGTCTGACATCCTGTTTGACAGCTGTACAGAAGACCAAATGCTCCACTTACTCAGTTGTCACTTTTCCAGTGAACTGAGAATCACATCTGAAATGTGGAGTTGTTCTTCTAGCAGTTGATATTTAGAATCTGATTGGACTTCTCAGATTTAAGTGTGTATGTTCGTAAACTTAGTTTTGAGTCAGTACTGTCAAGCTCTAAAATCAACTTCTGATGTAGTTTGAGTTTTTGGGAGCACAAGCTGAGTATTTCCGTCCTTTCTAGCAGGTGCTCTTTTTTCAAGCACTGACCATGTCTAGTAAAGTTAGGGGAGAGATGCACTAGCTTTTTTTAAGCAAGTAAGCTCTTGAACACAAAAGTGGCTAAAAAACTGACCACCAAATCAGCACTGCGCACAGGTCTTGAAATGCAATACGTTTCATGGTTCTGCATCTCACAAAGATGCACTACTGCACAAAGACTATTTGTGAATAAGGCTCTGCTCCTTAGTGTTCAACAACTTCATGATGAAATTTTTCTTTCAAATGGTACTGCCTGCAGGCAAGGAGGGAAAGAGCTTGTCCTGTTCCTCCTTCACGTTTTTGTTTCCACTTCTTCCCTTTGCATTATTTTTTTAACAGACAGCTGTCCTTGTTTGTCAGGACTAGGCATTGCAGTAAAAATGTGCATGCTATTAGTCTCATCCACAACAGTCGTATTTGAACTTCTGCTGTCTTCTTGGAAGTCCTTTTACCCCAAATTGCAAGTATTGTTGGTCTGTGTTTAACTGTTGTATCTGGTAAAAAAAAAAACACAGAAAAACATGCATGTTACAAATAATTAAAACAGAGTGATGTTATTATCTTCTGATTACAG
Seq C2 exon
GTATAATTTGGGTGATTACAGTGGAGAGATTGTGTCTGAGGTCATGGCACAGCGGCAGCCAATGAAACCTACCTATGCTATTCCCATCATTCCTGTGACTAACAGCAGTCCTTTCAAACATCAAGAAACTATGGAACTGAAAGAATATAAAGTTAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAAGCATCCTATGAGAAGA
R:
ATTCTTTCAGTTCCATAGTTTCTTGA
Band lengths:
286-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]