HsaINT0056889 @ hg19
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32580091-32581572:-
Coord C1 exon
chr10:32581424-32581572
Coord A exon
chr10:32580251-32581423
Coord C2 exon
chr10:32580091-32580250
Length
1173 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTCATTTGTATAATTTTAGGTA
3' ss Score
9.07
Exon sequences
Seq C1 exon
AATCGCAAAAATGATGAAGCCTCTTACGAAAAAATGCTTAAGCTGCGACGAGATCTAAGTCGAGCTGTTACTATTCTAGAGATGATAAAAAGAAGAGAAAAAAGTAAAAGAGAGCTATTGCACTTAACACTGGAAATTATGGAAAAGAG
Seq A exon
GTAATGTATATTTTAATAATGTTAGAGGAAGTATAGTGCCATTAACATTTTGTATATTGAGTTAATTTATTTCCTATGCAATAATCTAATTACAGAAATATCTTTTTTTAATAATAGAGACTTTAAATATGTGGTATGATACTTTTTATACTTTTACATGTTTTCCTCTATTTTCTTTAAAAGTGACTGGATTCACTTAAGTTAAAACATACCAAGTATTTCCATTTCAAAGTGGTCTTTTTTGGTCCTTGAGTTGCATGTAGGACTTGAGTTAATTGATAGTACTGCTTCTTTTTTAATGCATATAAAATTTAAAACACTGGATTGTTAAATAGAAAAGGGTAAAGAAAGAGGGAGAAAGGCCCATATATCTTACCACTCAAGCATTTGGCAAGGTACACAATGAAAACTTAAAGAAAACTTCTGCCCTATTTCTAGTCCCTATCCCCAAAGAAAACCACTTTTAAATTTCTTGTGATTACTTTTAGAAAAATTAGTTTTAAAGCCCAGGCAATTCTAATTAGCAGAAAGATCCTTAGCACCATTTTAGGCATTACTTTCAACTTCACCAAATCTTTCACCAAAATTGCTACATTAAAATTCCAGCTTTTGATTTTTTCCCAACAATCCTCTATTTATATGCCATGATAAAGCTATAAGCCAAAAAAGTAAAAGGAAGAAACAAAAGGAATTATGTAATCTTTGAGAGAAATTGAATAGTCAAAGTTTAACTACAATCTTGCCTTAAATGTAATTGGTGTTTATAATTATATCTCAGTCAGCTAGTTATTAATGGTTATAAAGATAAATACTTATAAAACTAACTTTCCAAAATTTTCTTCTTTTTCCTGCTTTATTTAGGTATAATTGACAAATAAAAATTATATATTTTATATGTTGGTCAAAGGGTACAGACTTACAGTTATGAAATGAATACATTCTGGAGACCTAATGTACAGCATGGTTAATAACAATGTATTATATACTTGAAATTTGCTAAGAGTAGATCTTAAGTAATCTCACCACATATACACACAAGGTAATTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATTATTTCACAGTATAAATGTATATCAAAACATCACATTGTATTCCTTAAATATATATAATTTTAAACTTTCATTTGTATAATTTTAG
Seq C2 exon
GTATAATTTGGGCGACTACAATGGAGAGATCATGTCTGAGGTTATGGCACAGAGACAGCCAATGAAACCTACTTATGCCATCCCCATCATCCCTATTACTAATAGCAGTCAATTTAAACACCAGGAAGCAATGGATGTGAAGGAGTTCAAAGTTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-EPC1:NM_025209:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCAAAAATGATGAAGCCTCT
R:
AACTTTGAACTCCTTCACATCCA
Band lengths:
302-1475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)