BtaINT0056836 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33505202-33507402:+
Coord C1 exon
chr13:33505202-33505350
Coord A exon
chr13:33505351-33507049
Coord C2 exon
chr13:33507050-33507402
Length
1699 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTCTGACTGATTTTTATCAGGGT
3' ss Score
6.88
Exon sequences
Seq C1 exon
CCTCACTTAGACCAAACTGGCAACTGGCCTTGGACTAGTCCTAGCGACGGAGGAATAGGGGATGTGCGATACCGATACTGCCTGACCACCCTGACTGTGCCCCAGCGGTGCATCGGATTTGCACGAAGACGGGTTGGGCGCGGTGGAAG
Seq A exon
GTGAGGCATCTCTGCTCCTAGCAGAGGGATGTCTTAGATGTGGGTGATGGAAAGTTTAGAATGAGGTGATCCTTCCAAAGAGCTCATTTCTTCCCACCTGCTCTTCTTAACTGGTTTTTTGTGTTTTTTTGACTAAGATACTTTGCCACTTTGTTACCTGTTACATAACAGTAGCTTTTAATGCATAACTAGTGGTTCCCTAATGGATCTGTTTTTCTTCTCAAAATTGAAAACCTCAGATATCTGTCCTCAGAGGTAGATGAAAACAAGTGTACATCATGATTACATAAATTCTATGACATTAAAAAATGTCATGTCTGACTCTTTGTGACCCCATGGACTATACAGTCCATGGAATTCTCCAGGCCAGAAAAACTGGAGTGGGTAACCTTTCCCTTCTCTAGGGGATCTTCTCAACCCAGGGATCAAACCCTGGTCTCCCGCATTACAGGCGGATTCTTTACCAGCTGAGCCACAAGGGAAGCCCAAGAATAGTGGAGTGGGTAGCCTATCCCTTCTCCAGCAGGTCTTCCCAACCCAGGGATCGAATCGGGGTCTCCTGCATTGCAGGTGGATTCTTTACCAACTGAGCTATCAGGGAATCCCATATGACATTAAAGAAATTACCCAAAATTATTTTAGGCATTCTGGGAGATACTGAGAAAAAGGATTAAATAGGCTAAGAAATGTCATATAACTAGTACACTGGGTTAACTCATCAGAGGAAAGGCTCCTGGCTCCATGCAGGACCTGATCTTGACCTCAGCTTGTCAGGACACCTGCCTTTGTCTAGACCTGATGGAGCCCTTGATGCTCTGGAGGTCTTTAGGTGAGAAGTTGTGTGGCGAGGGGAGGGATTGCCAAACACATGAAAGCAAAGGAAAAGAAAGACTCGTGTTGTATTAGTGAAAAAAAATTAAAAGGCAAAACAGATCAAGCTGCCTTCAGGAAGAAACCTAAGGGTCTAATTTACAGTAAATTAATGACTTATACACATTTCTTTCATTTTTTATCTTAATTGCAGTTGTTATCACTTCATGTTAGTTTAGAATTATCCAGTTAAGACACATTTTATTGAGTGCTTTTTCAACCTCATCATTAGTAGTGAAAGTTCTCTATGTTGGCTATATTTTATTCTATACTAGCATTAGTTAGTGTTAGCAGATGGATTCATTTATAAAGTTTATATAAATAAAGTAAAAATAAATCCTCTCGAGTGGTGACTTCAAATATTTTGTGTGTAAGAAATTTTAATAGTGTAAAATATCCAAAGATCACATACTTTTTTTGTTTTTCTCCTACCTCTTCCCTCAAAAAAATTTTTTTTTGCTTAAGAAACAGATACATTAGCAATGCTTCATAAATGTTTTGGTGCTTTGTAATGGAAGTGAAAGATCAAATTCTCTTGTATGGTGACAGTAACATATTGTTAGAAGGCTTTCTGTTGTAAGTTGGACAGCTTACTTTATTCTTCAAGGTGGAGTACTTTCTTCTCTATTCGAACCATTAAAAAGTGAAAGAACCTTAACAGAAATTGAGAGTTTAGCCTACGGAGCCAAATACTGAAATAATCAAATTTATAGCTTTTAAATATTCAGTAGGAGATGGCTTTGGGGGACTTGGGGAGGGAAGAGAAAAAAACTCTTGTGTAAATTCTGAATAGCTGTTCTACATACATTTTCTGACTGATTTTTATCAG
Seq C2 exon
GGTCTTACTGGACAGAGCGCACTCAGACTACGACAGCGTGTTTCGCCATCTGGATCTGGACATGCTTTCCTCACCACAACATTCTCCAGTCAATCAGTCTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCTAAAGACCTCAGTCAGATACTCGTCAATATCAAATCATGTAGATGGCGGCATTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGATGAGCTCTCCTGTCGAAAACTGTATAGGAGTATAAATCGAACAGGCACAGCACAACCCGGGACCCAGACATGCAGTACCTCTACGCAAAGCAAAAGCAGCAGTGGTTCAGCACACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067527=E_Pc_C=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCAAACTGGCAACTGGC
R:
GGCCTAAAATGCCGCCATCTA
Band lengths:
343-2042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development