GgaINT0101660 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14068899-14070526:+
Coord C1 exon
chr2:14068899-14069047
Coord A exon
chr2:14069048-14070173
Coord C2 exon
chr2:14070174-14070526
Length
1126 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTGCTTTGTTTTCTTTTAGGGT
3' ss Score
12.62
Exon sequences
Seq C1 exon
CCTCATTTAGACCAACCTGGCAACTGGCCATGGAGTAGCCCTAAAGAGGGAAGATTAGGAGATGTGCGTTACAGATACTGCTTAACCACTCTGACAGTACCCCAGAGGTGTATTGGGTTTGCACGAAGGCGGGTCGGCCGTGGAGGGAG
Seq A exon
GTGAGTGCTACGTAATTGTTGTGGTGGTTTTTTGCTTATTTATTTATTTGAAGTGAAAATGTGTGTATATGTATTTATATAATCAGTAGGTATATCAGTAAATATATATAATCAGTAAGTCATCTTTGAAATAAGCTGAAGTGCACAAAACCAGTAAAAAAAAAAAAACCCTCACAGAAGATGGAATTATTTAAAATACCATTTGATTGTTTGCTGATGTATGGTTTTAGCTGTAGTTGTTTCATAGGTTATTGGCATCGTTCAAGACCACATACTCTGTTTGGAGGTTGAAATAGATTTTTGATGAAAATGCATTTCTTAGTGCAGTTGTGCTGTAGAGGATAATTTTGGAAGGAATTTTTGGAAGTGAAAGTAACTGCTAAGTTGTAAATGTTGTCAAAAATCTTAAAGAATTCAAGACTGTTACTTGAAGCATTATACTTTTGCTCTACTGTAATGTTAAAAAATAGTTAAATATCACTTGGTGTTTAAGTGCATTTCCGTAAACACTGGGAATCTTGATGTCAGTTTTCTGGTCACTTTTTAATCATATTTTGGAAAAAAGGATTGTGGTTTGGCATTCAGATGTGCTTTAGAACCTCTTAATGTATTAGCAAGTCACATTAGGAGCTGCAGGCTCTTACTGGCATTTAGCAGGGTGGTCGGGATATGATAGCTTTTGGTGCTTTGTGGGCTGATGGTAGATGTGCTGACATAATGTAAAGTAAAGCACTTAGGTTGAATTTGCTGTAAGAGGGCACTTGGTTACTTAAGCATTTCAGTGTCCATTTTTATTGTGCTCCAGTAGTGTTCAAGCCCGATGGAAGGCTTCTGCAACTGATGTTGTGGTGCCTCAATAGCTCTACCATGGTGTACATCAGTTATTGATACAGTAAAGGCTAGAATATAGAAAGAAAGAGAAACCTAAATGTATTACTTCCTGTGAAGCACTAAAGATACAGTCATACTTCCTGTGGCTGTTTTCATAGGTGGTGTGTTCTAGAACAACTCTGTGGTTTCTTGTACTTCACGTGTGTCTTCCCCAAGCACACATGACAAGCTGGTGACTTCTTGGTATTTTCCTTTGGTATTTGCCACTGTGTAATTCTGCTTTGTTTTCTTTTAG
Seq C2 exon
GGTGCTACTAGACAGAGCACATTCGGACTACGATAATACATTTCATCAGCTGGATTTGGAAATGCTTTCCTCATCACAACACTCTTCAATCAGTCAATTTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCGAAAGACCTCAGTCAGATACTAGTCAATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGACGAACTCTCCTGTAGGAAACTGTACAGGGGTGTAAATCGAACAGGCACAGCACAACCTGGGACCCAGACATGCAGTACCTCTATACAAAGTAAAAGTAGCAGTGGTTCAGCACATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067527=E_Pc_C=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTCTGACAGTACCCCAG
R:
TGTGCTGTGCCTGTTCGATTT
Band lengths:
353-1479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]