RnoINT0055460 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57316565-57317899:-
Coord C1 exon
chr17:57317751-57317899
Coord A exon
chr17:57316918-57317750
Coord C2 exon
chr17:57316565-57316917
Length
833 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
GGTGTCTGCTCCTTGTGCAGGGT
3' ss Score
7.99
Exon sequences
Seq C1 exon
CCTCATTTAGACCAAACTGGCAACTGGCCCTGGACTAGCCCTAAAGATGGAGGCCTGGGGGATGTGCGATATAGATATTGCTTAACTACTCTCACCGTACCCCAGAGGTGTCTTGGATTTGCACGAAGACGGGTCGGGCGCGGTGGAAG
Seq A exon
GTAACGCGCTTCTGCTTTCCTTGCACCAGCATGCTTTTTAGACATTGGAGTCAGAGTTTAAACTGAGGCCCTTCTTGTGAACAGAGTCTAGAAGCTCCAGCTTGCTATGCTTAGCAGAGCTGTCTACATGTTCCCTTTGCACTCCCAACGTCCTCACACACTACACTGCGTAGTCCCTACAGGCCCGTGTGGGTTCTTATCTCCCCAAGCTTCTTAGCACCTGAGTTATCACAGAGTAGAATCCCAAGAAAGGACAAGTATACTTGTGTGTACACACTCAGGATTGGTTCAGGAGACTACAACCAAAGTCGCTGAGTTCTGGGGAAAACCTTACGTTAACTACTGCAGTGACCACTTAACTTTGCTGCTCATGGCCTCAGTTTGTCAGGATGTGGTTCTGGGGTCTGAAATAGAATATTTCATACATGGAGTGGAGGAGAGAAGGAACTGCAAAGCACAGAAAAGTTTTGGTTGAAAGACAATTTGAAAAAAAGAACTTTGTCCAACATTGAGCTTTGAGGCTAAAAGAACCAGAGCCAACAAGATGACTCAGTGGGAAGAAGCGGTTGCCACCAAGGTGACAGCCTGAGTTCTGTCCCCAGGACTCACCTGGTGGAAGGAGAAAAGCAACTCTTGGGAATTGTCCTGTGGCTGCTGCGTGCACGCCGTGCTCTGCTCCGTGTGCTGTGCGCATACAGTGTGAGAGTCAAACGCTGCAGTGATGAACTTGCTCACTTTAAATGTCCAGTGTACTGTTGCTCAGCTTGGGGGAAAGCGTTCGGGAGAGAAAGGAAAGTCTGTGATGTAATCTCTGGTGTCTGCTCCTTGTGCAG
Seq C2 exon
GGTCTTGCTGGACAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATCTGGACATGCTTTCCTCACCACAACCTTCTCCAGTCAATCAGTTTGCCAATACCTCAGAAACCAATACCTCGGACAGACCTTCCTCTAAAGACCTCAGTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCCCGGACACCATCCCTTCCTGACAGTGACAGTGGTGAGCTCTCCAGTAGAAAGTTACACAGAAGTATAAGTCGAGCAGGACCAGCGCAGCCTGGGGCCCACACGTGCAGCGCCTCCACACAGAGCAGAAGTAGCAGTGGCTCGACACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.697
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067527=E_Pc_C=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGACTAGCCCTAAAGA
R:
ACTGTCAGGAAGGGATGGTGT
Band lengths:
349-1182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]