HsaINT0056893 @ hg19
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32573626-32575770:-
Coord C1 exon
chr10:32575622-32575770
Coord A exon
chr10:32573979-32575621
Coord C2 exon
chr10:32573626-32573978
Length
1643 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTGTCTGATTTTTTAATAGGGT
3' ss Score
9.15
Exon sequences
Seq C1 exon
CCTCACTTAGACCAAACTGGCAACTGGCCTTGGACTAGTCCTAAAGATGGAGGATTAGGGGATGTGCGATATAGATACTGCTTAACTACTCTCACCGTACCCCAAAGGTGTATTGGATTTGCACGAAGACGGGTTGGGCGCGGTGGAAG
Seq A exon
GTAAGGTATTTCTGTATTCCTAGCAGAAGGATATTTTAGGCATTAGGGTGATTGAATCTAACTTTTAAAGTCAGGTAATCCCTCTGAACAACTCATTAGTTCCTATTTGCTATTCTTAACTGATCTGTTGACTAAAATATTTTTGTTGCTGTGCTGCCTGGTTCTTACACATCCATAGTTTTTGACATAACTCTATTGGGTCCCTAGTGGACCTGCTTTTCTCCCCAAGGTGGAAAACCTCAGATAAATTATCAAGGGGTAGAATTGTGAGAAAGGGCAACAGATGAAGACAAGTGTAAATCCTGATTGCACACAGTGTATTAAGTTAAAGAAACTGCAAAAAAGTTGTTTCACACTAGCTAGTATAATGGGTTTAACCTGACAGTGAAAAGGATCCATGCATAACCTGATCTTGACATCCCAGTTTGTTAGGATCTAATTGTTCTTCCTTTGTTTAAACCTTGTAGAATTCCTTCCTTCATACTCTAAATGCCTTTATGCGAGTTGCTTGTATGGGGACAGGAAACAAATAGCAAAACACATAAACTCAAGGAATGGAGAGACGTTAATGTATAATGTGCGGGGAAAATTAAAAGGGAAAGCAAATAATAGTATCAAGGTGCTTTTTCAGGAAGAAACCCAAGCGTATATTTATGATAAACTAATGGCTTATACATATATTTTTTTCATCTTCAACTCTTAATTGCAGAGGGTTTTTTTTTATTATTTAAACATTGGTTAAGAATTATCTAGGCACTAAAATACATTTTATTTAGTCCGTTTTTTTCCATCACTGCTGACATCAGGAGCAGTGAAAATTCTCTACGTTAGCTATATTTTATTCTATTACTAACATTAATCAATGTTATTATTTTGACTTGGAGCCATTTATAATGTTTATATAAATAACATAAGAGGCCAGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACTTGAGGTCAAGAGTTTGAGACCAGCCTGGCCAACATGGGGAAACACTGTCTCCACTAAAAACACAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCTGGGGCGGAGGTTGCAGTGAGCCAAGATCGCACCATTGCACTCCAGTCTGGGTGACAGAGTAAAACTCCATCTCTCTCAATCAATCAGTCAATCAATCAATAACATAAGAATATATCCTCTAGAGTAGTGGATCTCAAATATTTTGTCTATAAGAAATGTTAATGGTATACTATGTTTTTTGTTGCTTTTCTTCTCTCTTCTCCCTTTCCCCCCAAAAGGAATGAAGTTTTTGCTTAAATATAGAATAAATGTGTTCGCAACATTTTATAAAGCATTCATTTTGGTGCTTTGTAATGGAAGTGAAAATCTTTAGTTGAAAAACAATTTGTTAAAAGAACTTTTATTAGAAATTGAGGTTGTAGCCTATAAAAACCAAACACTAAAATAATCAACTTTAAAGCTTTTAAATATTCAGTATGAGTTGGCCTTTTGGCAGTTGGGGGTAAAAAGAAAAAGCTTTAATATATAATCTTTGAATAGCTATTTTAAATAACTGTTTCTTGTCTGATTTTTTAATAG
Seq C2 exon
GGTCTTACTGGACAGAGCTCATTCAGACTATGACAGTGTGTTTCACCATCTGGATTTGGAAATGCTTTCCTCACCACAACATTCTCCAGTCAATCAGTTTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCTAAAGACCTCAGTCAGATACTAGTCAATATCAAATCATGTAGATGGCGGCATTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGATGAACTCTCCTGTAGAAAATTATATAGGAGTATAAACCGAACAGGAACAGCACAACCTGGGACCCAGACATGCAGTACCTCTACGCAAAGTAAAAGTAGCAGTGGTTCAGCACACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-EPC1:NM_025209:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067527=E_Pc_C=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCAAACTGGCAACTGGC
R:
GGCCTAAAATGCCGCCATCTA
Band lengths:
343-1986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)