MmuINT0058041 @ mm9
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6448903-6450215:-
Coord C1 exon
chr18:6450067-6450215
Coord A exon
chr18:6449256-6450066
Coord C2 exon
chr18:6448903-6449255
Length
811 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
GGTGTCTGCTCCTTGTACAGGGT
3' ss Score
7.33
Exon sequences
Seq C1 exon
CCTCATTTAGACCAAACTGGCAACTGGCCCTGGACTAGCCCTAAAGATGGAGGCCTGGGGGATGTGCGATATAGATATTGCTTAACTACTCTCACCGTACCCCAGAGGTGTCTTGGATTTGCACGAAGACGGGTCGGACGTGGTGGAAG
Seq A exon
GTAACACGCTTCTGCTTTCCTCACACCAGCATGCCTTAGACATTGGAGTCAGAGTTTACACTGAGGTCCTCCTTGTGAACAGACTCTAGAAGCTCCAGTTTGCTGTGCTTAGCAGAGCTGTTTACACGTCTCCCACTGCATTACCAACGTCTTCACCCACTTTGTAGTTCTCACGTGACCCATGTGGGTTCTTAACTCCCCAAGCTTCTTAGCACCTGAGTTATCCCAGGGTAGACTCCCAAGAAAGGACAAGTGTAACTTGTATTTACACACTCAGGATTGGTTCAGGAAACTACAACCAAAGTCGCTGAGTTCTGGGGCAAACCTTATATTAACTACTGCAGTGACCACTTAGCTTTGCTGCTCATGGCCTCAGTGTGTCAGAATGTGGTTCTGGGTCTCTGAAATAGAATACTTCATGCATGGAGAGGAGGAGAGAAGGAACTGCAAAGCACAGAAAAAGAACTTTATCCAGCATTGAGATTTGAGGCTAAAAGAACCAAAGCCAACAAGATGACTCAGTGGGAAGGAGCATTTGCCACCAAGGTGACAGCCTGAGTTCTGTCCCCAGGACTCACGTGGTGGAAGGAGAGAATCAACTCTTGGGAATTGTCCTCTGGCTGCTGCATGCATGTGTGCTGTGCTATGTGCCCTATGCCGTGCACGCACAGTGTGAAAGAGTCAAATGCTGCCGTGGTGAACTTGGCAACTTTTAACTATTCAGTGTACTGGTGTTCAGCTTTAGGGGAAAGCGTTCGGAACAGAAAGGAAGAAACTTTGATGTAATCTCTGGTGTCTGCTCCTTGTACAG
Seq C2 exon
GGTCGTGCTGGACAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATTTGGACATGCTTTCCTCACCACAACCTTCTCCAGTCAATCAGTTTGCCAATACCTCAGAACCCAATACCTCGGACAGATCTTCCTCTAAAGACCTCAGTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTGCCTGACAGTGACAGTGGTGAACTCTCCAGTAGAAAGTTACACAGGAGTATCAGTCGAGCAGGAGCAGCACAGCCTGGGGCCCACACGTGCAGCACCTCCACCCAGAACAGAAGTAGCAGTGGCTCAGCACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-Epc1:NM_007935:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.697
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067527=E_Pc_C=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCAAACTGGCAACTGGC
R:
ATGGTGTCCGAGGCCTAAAGT
Band lengths:
354-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: