BtaINT0058314 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17853067-17856161:+
Coord C1 exon
chr7:17853067-17853127
Coord A exon
chr7:17853128-17856107
Coord C2 exon
chr7:17856108-17856161
Length
2980 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCCTCTTCCCCCCACTACAGAGG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTATGCGGCCATGAAGAGCAAGGAGATGGAGGAGCAGATTGAGATCAAG
Seq A exon
GTGAGTTCAGGTGGGATGGGCCAGGCTGGGGCAGGATGCCCCGGAAGCCCCCTGATGAGGGTGGCCCCACCCAGCATGGGCCACACAGCAGGGTGTCCCATGGCCTCAAGGGGTGATCCCTTGGCCCAGCTGCCCTTTCACTCACCACCAGGCCACACAGAGTGAGAGCCACCCCCACCCCCTGAACTGGGGACATGGTTTAACAGGTGGACAGTTCCCTGGGCCCGGAGATTCAACTCCCAGCCCTCTCCCTTCCCTGAGGTCAGGCAGAAAGTTCCAACCCTCTCATCACAGGATCTGGTCACCTGGCTACCAGCCCCATGCTTAGGTGACCTGGGGGATTTCCAAAAGTCACCTCATTAACATAACAAGTGACACCTTGATTCCTTTCTAAGAAAATTCCCAGGGTTTTAGGAGTGCTGTGCCAGGACCAGAGATGAAGACCAAATATATATTCCTGGTAGGTCACAATATCAGAGGGGCTTTCCTGGGCATGCAGAGCCTCTATACACAGACTCCCTTCCATCTCCTTCCCTCTGCTTTTGACCCTCCAGATGTGATCTTGGTTATCTCTCCACAGGGATCTAGCAGGCACCTACTATGTGCCAGAATCATGGCAGAGACTGAGGGCCCCCAGTCCAGTGGGGGTGGGGGTCAGACACAGATGCAAACCCCAACACAGCCTGGCTCTGTCTTCTTCAGGGACAGATTCCCACAGTGCCTGGGCCTGGCGTCCCACAGACCAGAGTTCAAATCTCAGCTCTACTACAAACCAGCTGGGTGACCTGCCAGGAACGTGAATGCACCTCTCTGAGCCTCAGTGTCCCCTTCTGCAAAATGGGGATGACACTTGCTCTACTGTTCAAATTATTATTATGAACCACCACCATCATCCCAACTTCCTCTCAAAAGACAGAAACAGAACCTAGATGATAATCCAGGTTACCTGCTGCCCATATCTGAGTGGGGAAAGAGGACCTTATTGTCCTGGCCCTGTTGGTAGGTTTTCTGAGAAACAATTCTGTGTCCTAAACTTTTAAGCATCTCCCTTTCTCAGGAATGGCAGCATTACTGATGCACCAGTCCAAACATGTACATGTGTCTTGCTCATGCAGACAAGGGCATGCTCTCACCTGGTGGCCAGGAGGGCTCAGCAGTAGGGAGGGATGCAGCAGACCCTCAGACCACATGTCCAGCCTGGAAATGTCCCACAAGACAAGCCTGAGCACCCCCAAGGGCAGGGCAGGACAGATGCCTTCTCCCTTGTCCCTGCCCTGTGCTCTTTCACCTTTTGCCTGTTTTAAAGCAAACCTGAGATTTGTTTTCATCAAGTACAGTGAGGTGACAAACACAGACAACCGCCTTTAGAAGGACAGTTTGTTACTCACAGTTCCCAGAGGGGCGCACCTCTGCTGTGTGTGCAGGGCCACATGGGGAAGCATCAGGGCAGGGCAGGAGAAAAGCCTGGGCCAGAGCCCGTGCTGGGATTTCCATGGGAAGGGTTGGGTCAGGGTTCAAGAGGGTGTGTAGGCAGGTTCAAGAGAGTCAAGATTGGCTGGTTTGAATAATTTCCAGGGCTCTGGCCTATAGGAGTGGTCACCACCTGTCCTGGGACAATTGAGGGCATGGGAAATAATGGTTTGTGTGTGAGAGGTAAGGGAGGTAGGCAGGGGTGTGACCGCTTAGTGTGTAGAAGGCAGACCAGCAGGCATGCTGTCTACTGTCCCTAGGAATTAACTAGTCCTAGGAGCAGCAGTATCACCGGGATTAGCAAGGCAGCAGGATATCAAAGTATCAAAAATACAGAACAAAAAACTTTTCAGTACTGTGATTAGTACGTAGGCCCCCACAGTCCTTGTTCACACCCTATCGGGTTTTCTCCTGGGAGGAAGAGGAGCAAGGTGAGGTGTGGTCAGCACACTCAGCTCCTCCAAGGATGGCTGAGCTTGGCCATCCGTGCGTTGAGGCCAGAAAGTAGACAGAACCCAGGGGTCAGGGGTCAGGATTCTGGTTCTGGATTCCTGTGACGGACAGAGACCCAGGCCTGCAACAGCTCTGACTCCGGCAAGCCAGGAGCCTCCGGCAAGACCCTGCCTGCCTCCAACTCAGTTTCTCTTGACATGAGTCAGCGCCCATCAATCAAGTCTGTGATCCTCTCTGACATAGCTGCTTCCAGGGTGTGTTCTGCATGTTTCCATCACCTTCTTCTCTCCGGAAGAATGTCCTGTGTGATACACAGGGAAGCAGGACTCTCGCTGACCTGCTGATGGAAACGATTTCTGTACCCACTGCTTAAAGGACTCGGGGGTAGAAACTAGGGGTGAGGCGGATGTCAACCTCCCCCGCTTCCCAGAAGGCTGCGGGGAAACCTACAACCACGAGTACCCCCACCAAAACCACCAGCACAGCATGGAAGGTGGAAGGAAGACTGCCTTGAAAATTAGAGGGGGTGGGGGCAACGGTGACAACTGTCGGGCGCAGCTGGTTCTCAAAGGGACGCAGAAATGTAGTCATCAACAGCACGCACGTTCGCAAGACCCCTTTCCTTTCCTGGACCTAGACTCCAAGTCTGTCCTCTAAGCCCTGGGGCTCAAATCCAAGCCGTGAGGGGTGGGGACTGTCTGCCAGCAGCTTCCCCCAGAACACAGAAGGCTCTGCCCTTGACAGGCCCAAGGCGACTCCACAGGAGGACACGGGTGCTGACTGCCCCCTCCATACCCCCTCACACAGTGCATATCCACCCAAGCCATCACATTGGTTTTCCTGAACCAAGATTTGTTTGTTTTTTTTTTTTAAATACCTAGTGGGCCATTCCAAATGAGAATTGGCCTTGACTGTTTTATGGAATCACTAACTTGGACCATTAAACGCTGGTGCCCTCCTGCCTGAAGATGGCCTGGCTCCAAGGGGACAGACTTCTGGGTGCACAGGAGCAGGACATGGGGCTCTGACGCACTCTTCCCTCTTCCCCCCACTACAG
Seq C2 exon
AGGCTTCGGACGGAGAACCGGCTCCTGAAGCAGCGGATCGAGACCCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294:ENSBTAT00000052616:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0222217=ATP-grasp=FE(16.1=100)
A:
NA
C2:
PF0222217=ATP-grasp=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]