HsaINT0058466 @ hg19
Intron Retention
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:30464]
Coordinates
chr19:7918159-7920954:+
Coord C1 exon
chr19:7918159-7918219
Coord A exon
chr19:7918220-7920900
Coord C2 exon
chr19:7920901-7920954
Length
2681 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ATCTCCCCCCACCCCCATAGAGA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
GTGAGTCCAGGGGCCCAGGGGCGGGGACAGGGATGGGAGGCCTTTGGGGGCTGCCCTCCGTACTCTAAAGATCGGCCGCTAGGGGGCGGGCCTTCCCAGCGCACAGGCGGACCCGGCGGTCCTTGGCGGACAGGCCTCCGCCCACCTGCGCCGTCCTTCACCTGTTAGGCCAGCTGTGAGCGCCTCCCCCGCCTGACGCCGCGGTAACCAAGACAGTCAAGGTCCCTGCCCCGCTGGGCCGCCCAGCGTCATGGGGAAGCAATCAATAAACCACTGAACTAGAGTGCGGACTCTAAATGCTCTGGACAAGGATGTGCACGCGGTGGGCAAGGCTGACTTGGGCAGAGGCTCCGGGCCCAGGGTGTCGAGGGCTAAAGGCCCAGGGCAGCAGCGTGCCTTGGGGGCTGGAGGAATTCCAAGAAGGTTGCAGTGGAGGACCCCGCAAGGGGACCGCCCTCTGGGGAAAGATGGAGCACGCAGGGCCCAGACACCAGGGTGTGTAGGGCAGGGTGTGGGCACTCACCCGGGGCCCCTGGTTCCTGGGGCAACTGGCCCACCAGCCCTGCCAGGTCAGGGGGTTTCCTGAGTGTGCAAAGCTTCTCTCTCCTTCCTTGCGCATTCTTCCCTTTACACGTGATTTTAGTTATTTACTCAACAAGCATTTATTGCCGGGCGCGATGGCTCATGCATGTAATCCCAGCACTTTGGGAGGCGGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAATGCAGTGAAACCCCGTCTCTATTAAAAATACAAAAATTAGCTGGGTGTGGTAGCACACACCTGTAATCCTGGCTACTCGGGAGGCTGAGGCAGGAAAATCACTTGAACCCGGGAGGCGGAGGTTACAGTGAGGCAAGATTGTACCGTTGCACTCCAGCCTGGGCGACAGAGTGAGACTGTGTCTCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAAAACATTTATTGAGCACCTGCTGTGTGCCAAAGTCACAGCTGAGACTGAGGGCGCACCAGTGATAGGAAGGGACACAGACACAAACCCAACACAGCCTGGCTCCATGCTCTTCAGGGGCAGAGCCGCACAGTGGCTAACACTGGAGTCCAACAGACAAGGATTCAATTCCAGCTCCAGCGGCACAGTGGCTCACACCTGTAATCCCAACACTTTGAGAGGCTGAGGTGGGAGGGTGGCTTGAGGCCAGGAGTTGGAGACCAGTCTGGGCAACATAGCAATACCCCGTCTTTACAAAAATATAGAAATAAATACAAAAGGTGTGCCCAGCTCCTGCAAGGATGGCTGTGCTTGGTGCTGTGATGGGTTGAAGCCAGAGAGATGATAGGGAAACCCAGGGGCCAGGGATCAGGGCTCCAGATTGCTATGAGGACCAGAGACCTGAAATAGCTCTGACCCAGCTGAACTGAGGGACTAGGGCAATGCCCTGCCCCACTCTGACTCAGTTTCCCCACATGACATGCATCAATGACTGTCAAGTCTGCGGTTCTGTCTGACTGCATTTGCTTCCTGGGAATGTTCTAGGTGTTTCCATCACCTTTTCTCCCCAGAAGAAACCCAGGAAATATTCTGTGTGACCTGCAGTGTGGCAGGGCCCTCACTCACCTGCCAATCCAAACAATTTCTGTACCACCTTAGTATCAAGCAAGGGGGCACAGGTACAGTCGAGATTCAACTCGTTTGCAAACCTCACCTGCTCCCCAGAGTGTCCTGGGGGAACCTAAAGTGCAAATATCTTTTTCTTTTTTTTTTTTTTTTTTTGGAGATGGAGTCTTGCTCTGTCACCCAGGCTGCAGTGCAGTGAGGTGATCTCGGCTTACTGCAACCCCTGCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCCTGTAGCTGGGATTACAGGCATGCACCACCACGCCTGGCTAATCTTTGTGTTTTTAGTAGAGGCTGGTCTCGAACTCCTGACCTCAGGTGATTTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTACACCTGGCCTAAAACCGCAAATATCTAGCCAAAATCCATCAGCACAGAATGGAAGGCAGGAGCAAGGGAGACGTCTTCGAAACCCCAGCCAGGGAACAGAGAAAACCACTGGGGACAGGTTGCTCTCAGCAGGTCATGGGAATGTAGTTGTCGAGAAAGGATGCATGATCAGCACGCTGGACCCAGACTCAAAGAGGAGCCTGCCCCCGGAATTGAACCCGGGTGCTTGGGGCAAAGCAGCGAGGGGTGGGTGGTGGCTGCTCGACAGCTGCTTCCCCCACTGATTCCCGCACAACCCTTGGCAGACTGACCCACGTGTGGGAAGGAGTCTTCTGAGGGGGCGTGGGTACTGACTGGCCCCCAAACACACACACAGCCACGAAGGCACTGACGTTATTTTTACTGAACCCAGGTTTGTTTTAAAACTTTATTTTTTTGTAATCAAGCCAGTCTGAACAGGAATTGGCCCTGTTTTCTGAAATCGCTGACCCAGAACGTAAGATGCTGGCTGTGCCCTGCCCGGAAAAGTGGCCTGGCCCTAAGGGGACTGACCCCGGCAGTGGGTAAATGAGGGGTGCATGTAGACAGGCGTGGGGGGCGGGCTATGACGTGATCTCCCCCCACCCCCATAG
Seq C2 exon
AGACTTCGGACGGAGAACCGGCTCCTGAAACAGCGGATTGAAACCCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-EVI5L:NM_145245:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)