DreINT0010177 @ danRer10
Intron Retention
Gene
ENSDARG00000052766 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr1:44548662-44549116:+
Coord C1 exon
chr1:44548662-44548722
Coord A exon
chr1:44548723-44549062
Coord C2 exon
chr1:44549063-44549116
Length
340 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TTTTGTATTAATTTTAACAGAGG
3' ss Score
5.89
Exon sequences
Seq C1 exon
ATTAGAAAAGGAATATACTACCATTAAGAACAAGGAGATGGAAGAACAAATTGAGATTAAG
Seq A exon
GTCTGTAACATAGCAAAGATTGTTTGTGTAAAATGCCTCATCTACACCTTAAGGAGAATCTTACTCCGGTACTTGCTTAAAAAATTGCATGAACATGATTTGCACATAATCGAATCACAATAAAACAATTATATTGTCAGTAATTTGAATAAATTTGACAAAACTGTATATTCAACTAATAAATAAATGTTATTATAAATGTTAATTTAACTGCTATAGTTAATAAAATCTATTACAGTTCTTTTTTGCTAATAGAAATAAAACTGAAGTAAAAATGAGGTTGAAATTAATTTAGAATAAACCTACAGTATATTTGAACATTTTGTATTAATTTTAACAG
Seq C2 exon
AGGCTACGTACAGAAAATAGATTACTGAAGCAGAGGATTGAAACACTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052766:ENSDART00000125037:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]