RnoINT0056987 @ rn6
Intron Retention
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2595556-2601350:-
Coord C1 exon
chr12:2601290-2601350
Coord A exon
chr12:2595610-2601289
Coord C2 exon
chr12:2595556-2595609
Length
5680 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTCTTTTTCTTCCTCTATAGAGG
3' ss Score
9.73
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCTATGAAGAGTAAGGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
GTGAGTTCCAGAGGCGTGAGGGAGGGCAAAGATGGGCTGCCTTGAGGCTTTCCCTCGCAAAGCCAGAGCTGCCCGCTAGAGGGCAGTCCTAGCTAGCGCATGCACGGATAGAACGGGCTGGCCTGGGCGGACAACTTCTGGCTCCGGATTACCCTCGCTCACTTGCCCCTTCCTTCACCTGCCAGCCCCGCGTGGGAGCGCATTCCCCAATTGGCATGTCCTCAAAGCTGGCCTCACAACAGTAAACAAGACAGTCAAAGTTCCTTGCTTTCATGTCCCCGAACCCCCCATGTCATGGGGCGATAGTCAATAAATCACTGAAATAGTGTGGATTCCAGAGTGCTCCGGATATAGTCATACAAGAGACAGTCGCATCTGGGGAGACACTCTAGGTCCAAGAGTCCAGTGTAGAGGGCCTAGGATAGAAGAATGTGCCTGGTGGACAGGAGAACACCCTGGGGACACAGAGGTTGGGAGCTAAGGAGAAAGGCTCAGGCAAGCAGGCTATGTAGGCTAAGGTATGGTCATCCACTCAGGGTCCTGATTGTACTGTAGCAGCCAGCCAGCCCAGCGTCAGTTCCTTGAGTGCACAAAACGTCCAAAACCAAACTTACCTCTCAATGGCCTCTTCACCCCTCTTCATGTGATTTTAGCCATTCATCCAACAAACATCTTTTTTTTTTTTTTTTTGATTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAACAAACATCTATTGAAACAAAGATGAGACCTAGTCTTAAGTGACAAGGACCTGGCTTCCCAGATAAAGGCACTCTTGAGCATTGAGAGTCCCTCAATATCTTTCCAAGGAAGCCCAGGTGCTGCCAGGTACAACCCAGGGCCAGGATGTAGAAGAGAGGAGAAAGAAAAGCTCATACCCACCTACTCCAACTGACCAGCTAGCTACACGTTCCCAAAGCCTGCTAGCCAGGTTAAGGACCCTACAACCCAATATAGGGGACAGGCAAGGACACGAACCTCCATATAGACCTGGTTTTGTCCTCCACACTTGATGAATCAAAGTGGTTAGCACTGGTGTCCCACTGAAGACCAGCTGTGTGGCCCTGGCAGGTAAATTCACCTCTCTGAGCCTTGGAGCTTTGCTGTGATGTTCCTGTCACTGTCCGCCTCCAGTGCATTGTTTCTACCTCCTGTGGGAAGTCAGGGGCAGAGGCCTGTGCCGCAAGCTGAAGCACTTGGCCCTGTTGAGGCTTCCAGAAAGATTTCCATCCTGGGTTTGTGAGCCATCTCACAAGGAAGTGTTGCACTAGACCAAATGTGGTTTTTGCTGTGTGCAGATGAGCGGCCTGCTCTCATCAGGAGACTGTGAGGCCCAGAATAGACAAGAATGCCATAGACCTTGAGACCACAGGCCAGACTGAAAGTTTCCCCTGAGAAGAGATTTCACCAGAGGCCTTGAAGAGTCAGGCAGATGTCTCCTCACAGGGTATCTTACAAGTGTCCTGCAGTTTGGTCTCTCACTTTTAGCCTGTCTTAAAACATCCTGATTTGATGCTGGGAGGTGGTGATGCATGCCTTTAATCCCAACACTCGGAGGCAGAGGCAGGTGAATCTCTCAGTTTTGAGGTCACCCTGGTCAACAGAGCAAGTTATGGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCACAAAAGCCAAATAAAGTAACAGAAACAAATCCCTTATTTGCTTGCATCGGATAAGGCAAGACTTAGACAACTACACTATGCAAAGGTGCATAGACACTGCCTTTGAAGGAAGCGTTCGTTGAGGCTGGGGCTGTAGCTTAGTGGTGAGGGTTTGCCCAGCACACACGAGGCCATGGGCTCCATCCTCGGTACAGAACAGCAGCAAAATGAAAAGAGGGCAAAGGAGATGGCTCAGTGGGTAAAGTGTTTGCTGGGCATGCATGAGTTCAATCCCCAGGACCCACGTAAAAGAGCCAGGAGCAGGAGTGTTCCTTCAGTCCATCCACAGACACACAGAGACAGGCAGACAGGTCCCTGCAAGCCAGCCTAGCCACATTGTCGGCTTCCAGGTTTAAAAAGGAGGGGTAAGGCTGAGGAGAGGCCTCTGTAAAGTGCTTGTCTCAAACATGGAGACTTAAACCCGGAGCTCCCAGCCCAACAGTAAAGCCCAGCATAATCAGTGCGTTCTAACCCCACCACTTGGGACTGGGAGAGGTAGCAGGTGGAACCCATTTAGCCAGCCAGCCTAACTCAGTCCATGGGCTTCAGCTCTAGTGGGAACTGCATTTCAAAAACTAACATAGAACAGGGGTAGTTGCACATGCTTTTAATCCTAGCCGTGAGGTAATTGAGGCAGGTAGATCTCTGTTGGTTCAAAGCCAATTTTGACTACATTACAAGTCCCAGCCAATCATGGCTACATAGTGAGATCCTGTCTCAAATAAACCAATGAACCTAGGTATGGTGGCACAAGTCTGTCACCCTAGGACTGGGGAGGTGGACTTTGGAGGGTCACCGCCACTCCTCTGTGACTCTGTTCCTTACACATGATGTGAGTCAGTGACCATCAGGTCCATGATTTGCTCCACTGCTTTCTGGGTGTTTCTATCTCCCCAGGAAGCAACCCAGGAAATGTCCTGTGTAATGCATAGGTAGTATCTAGTTTCATTTCTGTTGCTGTGATAAAATACTCTGACAAACCAAGGAAGACTGGAGAAATGGCCTAGCAATTAAACTCTCTGGCCGTTCTTCCAGAGGACCTGTGTTCACCACTGTTCACCACTGTCTATCTCGAGGATCCCAGGCCCTCTTTGGCCTCTGTAGTCACTCCTGCCATAAAATTAAAACAAAATGTTAACAAAGATTTTAAACTTAAGACAAAAAGTTATGTATTTTAGCTAACAATCCAGATTACAGTGCATTACCACCACGGAAGTCACAGCAGGAAGAGCTTGAGACCATTGGTCACATCACATGCAGTCAAGAAGAAAGAGATGCTCACATGTCGAAATACTCTCCTGCTTGTGCTCAGTTCTAGTTCTCCACTCAGAATTCCCTGCCTGGTTAGTGGTGGGCTGTCTTCTCTCACATCGATTAAGGCATTCAAAAAAGAAAAAGAAAAACTTCCCCTAGCTGGGAGGTGGTAACACACACCCTTAATCCCAGAACTCCTGAGGCAGAAGTAGGTGGATATCTGTGAGTTCAAGTCCAGCCCAGTCTACCAAGCAAGGTCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTTTTGAAAAACCAAAAAAAGAAAGTAAAGAAGGAAGGGAGGGAGGGAGGAAGGAAAGAAGGGATGGTGGGAGGAAGGGAGGAAGGAAGGGAGAAAAAGAAAATCCCTATAAACATGTCTATGAGCCAACGTAATGTAGACAAATCATTAAGATTCGCTCCCCAGGTGACTCGAGGTTGTGTCAAGTTGATGACGAAAACCAACCCTCACAGCCTGGTAGGCCTTTTGGTCATCTACTACCACAAATGATTTCATAACCAGGGAGCTGAGGAGCCTACCCACAGCACATCTGCATGCTCACCAGCTCCGTAAAGGATCCCAAGGGAACTTAAGACCACATCCACTTACCCTAAATTCCTCATCCCAGAACAGAGGGCAGAGCCAAGCATGGGGTGGGATACCTCTAATCCCCTACGCAGGAGGCAGCAGGATCAAAATTCAAAGCTGACTATACCATATAACAAGACAGCAGGGAGCAGGGAAATAGTCATATCAAGGGCAATGTGTCTAAAGGTCAGAGATGTGGCAGAGATGGTGCCTGGCACGCAGGAAGCCCTGGGTTCTATCCACCCCGGTGTCACACTGCATAATCACAGCACCATGGCACACAGCTGCCATCTCAGTTCTCAGGAGGTAAAAACAGCAGCATCAAGGAGTCGACAGTGTCCTTGCTTGTGTACAGCAAGTTCTATGCCAGCCTGGGATACATGAAGTCCTGTCTCAGAGAGAAATCGTAATTAAAGAAAAAAACGTACGTGTTCAACACAAGAGACCTAAATTCTGAGAGGGGGTGTTGTTCCAGAGAGTCTAACTTAGAGGCTGCTGGAAGCGAAGGGAAGGGGGTCAGCACTACCTGGCACCAGCGTCCCTTGGAACACAGGGGAAAGACCCTTGAAAGACGAGGTAGAAACAAACGTCTGAGGATAGTATAGATGTGGCTGCTCCTTACACTTACTTAACACGTGTACACACATGCACACATGCACATGCTAGGGGCTGGGGAGAACGGAGGGGTTTTTTATTTTTATACTTTAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGACCTTGATTTGTAGACCAGGCTGGCCTCAGACTCAGAGGTCCACCTACCTCTGCCTCCTGAGTGCTAGGATTAAGGGCATTTAACAACACACCCAGATCAGATTCTTTTGTGAGTTTTTTTTTTGTGTGTGTCTGTTTGGTTTTTTGTGTTTTTTTAAATAATGTTGAGCCAGGCAGTGGTGGCACAAGCCTGTAATCTGAGGACTCCGGAGGCAGAGGGTTTCATGCAGCTTTCGTACCCCACCTAAATAAACTCCGGAAATGGACTTTGATACCAGCCCCCGCCCAGAGAATATTGAATCTGTGGATGGAAAACACACATGCACACACACACACGCACATACACATACACACACGTTGCTTAATCTCAACTTGCCTTATTGGCTCAATTGCTGGACAGTGTTAATCCCCACGGCAGGATGCCCACCCCAATACTCTTAGCTCAGCACCCAAAATCTGTCTCGACTTTAGTTGCTCAGTTCCTTTAGTCCCAGCTCAATGTCCCATCCTCCTGGCTGGAGAAACAGCCTGTGGGGGCTCCACCCAAGATTTCCCATGGCTGGTTGGCATCTTTACTGATAGGTCAATTGGGAACAGGATGTTAGCATCAGAACCACCCCTACAGCAGAGGCTAGATGGCCTCTGAGATTAAGGCCAGCATGGTCGACAGAGCTGGTCCACAGGGTTCCAGGACAGCCAGGGCTACACAGAGAAAGCCTGTAGTGCAAAAGCAGATTAATGCAAAGACAGATAGCATACGATTATTTCAAGACAGGGTCTCCTCCAGACCAGGCTGGACTCCAATTCAATAGCTAAGGATAACCTTGAATTTATGATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTATAGGCATGTGCCACCAAGCCAGATTTTTGCAAAGTAAGGGCTTTTTTATGTATAACACAAAAGCACTCTATCAACTGAGCCACATTCCCAGCACCAAAACTTTTAAACTCTGAAAAGTTTTATTTTACCTTTTCAAATGGGGTTTGTTCTTTGGGGGGGCTTCTGGGGGATAACATGCATATGGAGTGTCAGAGACAACATGTAGGAGTTAATTCTCTCCTATCACATGAGTCCTGGCTCTAACTCAGGGAGCTGGGCTTGTCAGCAAGCACCTTTATCCAGTGAGCCAGCTTACAGGTCCTCAGAGGACCTTCCTTGACCTCTGCGGTTGGTGAGTGGAGATTAAGGGCCTGTAAGTGTTTGGAGGCTCTGAAGTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCCTCTATAG
Seq C2 exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034:ENSRNOT00000001367:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]