MmuINT0059540 @ mm9
Intron Retention
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4193306-4193701:+
Coord C1 exon
chr8:4193306-4193366
Coord A exon
chr8:4193367-4193548
Coord C2 exon
chr8:4193549-4193701
Length
182 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ACCTTTCCTTCACCTGCCAGCCC
3' ss Score
7.9
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCTATGAAGAGTAAAGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
GTGAGTGCCTGAGGCGTGGGGGAGGGGCAGAGATGGGCTCCCCTGAGGCTTTCCCTTACAAATCCAGAGCTGGCCGCTAGAGGGCGGGCCTATCTAGCGCACGGGTAGAACAGGCTGGCCTGGGCAGACAATCTCTGGCTTCGGATGACCCTCGCTCACTTGACCTTTCCTTCACCTGCCAG
Seq C2 exon
CCCCGCGTGGGAGCGCATTCCCCAGTTGGCATGTCCTCAAAGCTGGCCACACAACAGTAAACAAGACAGTCAAAGATCCTTGCCTTCATGTCCCCGAAGCACCCCAAGTCATGGGGCGACCTCCAATAAATCACTGAAATAGTGTGGATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-Evi5l:NM_001039578:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGAAGGAGTACGCAG
R:
TATTTCAGTGATTTATTGGAGGTCGC
Band lengths:
202-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: