BtaINT0058323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17863318-17865095:+
Coord C1 exon
chr7:17863318-17863413
Coord A exon
chr7:17863414-17863586
Coord C2 exon
chr7:17863587-17865095
Length
173 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACCCCAACCCCCCGCCCCAGGTG
3' ss Score
6.82
Exon sequences
Seq C1 exon
AGAGAGGAGGGCCGCATCCAGGGCCAGCTGAACCACTCGGACTCGTCGCAGTACATCCGCGAGCTCAAGGACCAGATCGAGGAGCTGAAGGCCGAG
Seq A exon
GTGAGCGCGGGCGGGGCGTGAGAGCCCTGGTGGCCGCGACCAGTGATGGGCCGGGCGTCGGCGTTTCGGGGAGCGGGAGAGGAGGAGGGCCCGGCGGCCGGACTCCATCCATGGGGACATCGATGCACGCCTCCAGCGCGCGGGTCCCACCTCACCCCAACCCCCCGCCCCAG
Seq C2 exon
GTGCGGCTGCTGAAGGGCCCGCCGCCCTTTGAGGACCCGCTGGCCTTCGACGGGCTGGGCCTGGCGCGGCACCTGGACGAGGACTCGCTACCGTCGTCCGACGAGGAGCTGCTGGGCGTGGGCGTGGGCGTTGGCGCCGCGCTGCAGGACGCGCTCTACCCGCTGTCCCCGCGCGACGCGCGCTTCTTCCGCCGGCTGGAGCGGCCGGCCAAGGACAGTGAGGGCAGCTCCGACAGCGACGCCGATGAGCTGGCCGCGCCCTACAGCCAGGGCCTGGACAACTGAGGCCGTGCCACGCGTGCTCGGAGCCAGGGCGCGGGGGTAAGGGGGTAGGCCGCCGCCAGCCCGCTCCTGCGTCGGCGCCAGCTTTTCACAGACTCCACGCCCTCGGCAGTTTCACCCACCCAGAGGGCCAGGCCCAGCGCACAACCGGGCACAGAGGGCAGGGCCGGAGGCTGGGGATCCTCACAGTGCCCTGGCAGACCCACCCTCCCCAGCAGTGTTTACCCATCTTGGTCCGTTCCCTTCTCGGCCCATTTACCTGGAAGGTCTGCCCCTCTTAACAGCCAGGGCCAGGACGACCCAAGGGTCCCAGGACTGCACCAACGGAAGCTGCCCCTCCTAGCCGGCCTCCTCCTGGGACAAGAGCGGCCCTGCTGGGAAGGGCCCAGGCTCTGGGGCAGGCCTGAGGAGGAAGGTGCCCCTGTAGGCCGGACTTTACCACCCATGAAGGCCCTGGGGATCCTTGGCCTCTGGAGACAGATGGCCAGGCAGGGCTTCCCTGCCTGGTTGCAGGCATTGTGGCCCCTGCAACAGAAACCAAAGTCCCTCCTACTGAGTGCAGGGCTGCCAGGGTGTGAGTGGCCAACTGGAACCAGCCAGGGCCTGGGCAGTATCTGTCCCTACTTCCTAGGGGCCAGAGCAGCTGTAAGGAAGTGGAGACACCTCCCCTTCCCCAGCACCCCACCTCTTCCTCTGTGGCAGTCCCATCACCCCAGCTTGGCCAGTGACGGGGGGAGAGGGGCTCCTCATGCAGGCTAGCCTCCTCTCCAGGGGGTCCCCAGCCTCCAAGTCCCTTCCTCCTCTGTATCCCTAGCCCCACCATCCAGCCCCAGGGGAGGAGGCCTCCTGGCTGAGTGCCCCCCCTACCTGCTCACAGTGGTCCCGTGGTCTCTGCTGAGTCAGAGCCAAGAACGGTGCCAAAGTCCAACGATGCCCCCAGACCCGACCCCCCCCGGGACCTCATGACCCCCGGGCTGACCTTCTCGGTGCTCCTGGAGCCTAGAACAGCATCACAAAGAGTCCCCCTGGCGCTTCCTGGGGTGGGGATCCATGCTCAGTCCCCCCTTTCCGGTCGCCCACTCAGTGTTACAAAGCCTGGGGACCAGGGTGGGCATCCCAGGGGCTCACCCACATGCCCCCCGCACTGCCCACCACCATTTTGCACACTGCCTGTTCACACTCCACATGTCGCCCAGGCGGGAAAGATGGAAAATAAAGTGTATTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294:ENSBTAT00000052616:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCAGATCGAGGAGCTG
R:
GCTGCCCTCACTGTCCTTG
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]