MmuINT1009820 @ mm10
Intron Retention
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4206232-4208051:+
Coord C1 exon
chr8:4206232-4206327
Coord A exon
chr8:4206328-4206495
Coord C2 exon
chr8:4206496-4208051
Length
168 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCCTCCCCCGCGCACACCAGGTG
3' ss Score
6.68
Exon sequences
Seq C1 exon
AGGGAGGAGGGCCGCATCCAGGGCCAGCTGAACCACTCGGATTCATCGCAGTACATCCGGGAGCTGAAGGACCAGATCGAGGAGCTCAAGACTGAG
Seq A exon
GTGAGAGCAAAGGATATCGGGCACAGGCCAAACGCTGCTGCGGGGACCCAGATAAAGCATGAAGCTAGGAGGGTGAGGGAGGAAGGCGCCTGATGGCTGGGGTTCTCTGGGTATGTCGATCTACGTCTCCAACGCGCGGGCGCCTCCACCCTCCCCCGCGCACACCAG
Seq C2 exon
GTGCGGTTGCTGAAAGGCCCACCGACATTCGAGGACCCGCTGGCTTTCGATGGGCTCAGCCTAACGCGGCACCTGGATGAGGATTCGCTACCATCTTCTGATGAGGAGCTGCTGGGCGTGGGTGTGGGCGTGGGCGCAGCCCTGCAGGACCCACTCTACCCTCTCTCTCCCCGGGACGCGCGCTTCTTCAGAAGCCTGGATCGGCCAGCCAAGGACAGCGAAGGTAGCTCAGACAGCGATGCAGATGAACTAGCCACTCCTTATAGCAACCAGGGCCTGGACAACTGAAGCTGGGGGCCCACTCACGGGGAGCCTGGAGGCCCGCATTGCTGGCAGGGAGAGATCAGCAGTCCGCGAGCTTGCTGCTCCACAGTACTAAGGAATTCTGTGCCTCTGTAACTCCTGCCAACTGAGGGCCAGGTGGAGGAGGCAGCACAGAGGGGCAGGGCCTACTGGCAGGCCTGCCCTGCATAGCAGTGTTTATCCGTGTTAGACCATATTGTCCAAGCCCTCCTGAGTTCAAGGGGTGCGTGGGCCAGTTACCTGGAGGGTGTTGCTCTCCTAACATGGACAAGGGCCGAAAGTGGGGAGGCCCCAGGACTTGTTAATAAGCAGGAAGCTTCCTCCTCCTAGTCAGCTTCCCTTTGGGACAAGGGAGGCCCTGCTGGGTGGGGCCCAGGAACTACAGGTCTGAGGAAGGAGGGGCAACTTGGACTGGATATTAGCACCCCAGGACAGGTTCTCTGGACACAGTGATATTGAGCAGCCAGTCCCTTGCCACTGGGGACAGATGGCCAGGCTGGACTTTTCTGCCTGGTGCAGGCATCATGGCCCCTGCAGCAGAAACCAAAGCCCCCAGCCCATCCTGTCTGCAGGACATACCACCTGGGGTGTGAGCAGTCAGGGGGAACCAGCTCAGACCTGGGAAGTCTCTCCCCACTCTCTAGGGCTATAGAAGCTGCAAAGAAGAAACCCTTTCCCTAGAGCACCCATCTTCCTCTGGGGAGTACTAATATCACACGTGTTGGCTGGCTGTAAAAGAGAGAACCCCGCTACTTGGGAGTTCTCAGCCTCGGTCCATTTATTCCTGTGGACTTATTCCACTTATTCTGGCTAGAGTTTCCCAGTCCGTTCCCTCCCCTTATCTCCTCAGAGTATTCCCATGGTCTCTGCCCAGTCAGAGTTGAGAATGGTGCCAAAGTCCATCAATGCTCCCCAGGCTCCTTTACCCTTCACCCCACCCCAACCCGCATCTTGGACCCCTGGGGGCTGACCCCTTCTCAGTGCTCCTAGAGCCTCAAGTAGAATGGTGCCCACAGCATTCCCTGGGTGCTTCCTGGGTGGGGCCTCCAGCTCCGTTTCCATTCCTGGTGGCCTGCTCTTCAAGTGTTAAAAAAGCCTGGGGGCTGGAGCAGGGTACCCCTGAGGAGGCCCTCTTGTGTGCTCCTCATGTGCCCCTCCACACTGCCCACCACCATTTTGCACACTGCCTGTTCACACTCCATGTCTCCAAGGCAGAAAAGATGGAAAATAAAGTGTATTTACACAGTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832:ENSMUST00000176149:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAGATCGAGGAGCTCAA
R:
GAGCTACCTTCGCTGTCCTTG
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types