HsaINT0058474 @ hg19
Intron Retention
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:30464]
Coordinates
chr19:7928071-7929862:+
Coord C1 exon
chr19:7928071-7928166
Coord A exon
chr19:7928167-7928309
Coord C2 exon
chr19:7928310-7929862
Length
143 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCGCCGGTCCCCCGCCCCAGGTG
3' ss Score
7.5
Exon sequences
Seq C1 exon
AGGGAGGAAGGCCGCATCCAGGGCCAGCTGAACCACTCGGACTCATCGCAGTACATCCGCGAGCTCAAGGACCAGATCGAGGAGCTGAAGGCCGAG
Seq A exon
GTGAGCCGGCGCGGGGATGCCGGGGACAGGCCTGGGTGTCGTCGGCCTGGGACGAGCCGAGCGCAGGTGCCTTGCGGAGGATGCGGCTGGGAGGGCGGGGCAGAAGGCCGGTCCACGCCTGCAGCGCCGGTCCCCCGCCCCAG
Seq C2 exon
GTGCGGCTGCTGAAGGGCCCGCCGCCCTTCGAGGACCCGCTGGCTTTCGATGGGCTGAGCCTGGCGCGGCACTTGGACGAGGACTCGCTGCCGTCGTCGGACGAGGAGCTACTTGGCGTAGGCGTGGGCGCTGCCCTGCAGGACGCATTGTATCCTCTGTCCCCGCGCGATGCGCGCTTCTTCCGCCGTCTGGAGCGGCCGGCCAAGGACAGCGAGGGCAGCTCAGACAGCGACGCCGATGAGCTGGCCGCGCCCTACAGCCAGGGTCTGGACAACTGAGGCCATGCCCAGCGCGCCCGGAGTCAGGAGGCCGCAGCCGCGGGGGGCGCCCGGGCAGTCCGCGTTCTGCTCCCCACCTGCCGCACTTGACAAACTACGCGCCCTCTGTGGCTCGGCCACCCCTAAAGCGAGGCCCGGCGAGGCAGCGCAGAGGGTAGGGTCCGACCTGGGCTCCTCAGGGCCCCGGGGCAGGCTCTCTATCCCCAGCAGTGTTTACCCATCTTGGTCTGTACCCCTCCGGGCCCTCTGGCGTTCCAGGGGTGCCTGGAGGGGCTGACTGCTCTCTTAACAGGAGGGCAGAGGGCAGGGGACAGACGACCCAGAGGTCCCAGCACTGAATGAGCAGGCAGCTCCCACCTCCTGGCAGGCTTCCTTCTGGGACAGGGGCGACATTGCTGGGAAGTGCTCAGGAGGTAGCCGAGGCCTGAGGAAGGAGAGCGCCAGCTCTGGGCTGGACATCAGCACCCCACAACACTCCTCGGGATGAAGTGACCCTTGACTAGCCCCTGGCCATCTCTAGGGGAGTCAGGCCGCTGGGGACAGATGGCCAGGCCGGCCTCTCCTGCCTGGCGCAGGCACCGTGGCCCCTGCAGCGGAAACCAAAGTCCCCCTACTATGTGCGGGGCGCCTGGGGACTGAGTGGCTAACGGGAAGCCTCCCTGCTTCTCTGGGGCCAGAGCAGCTTCCAGGAAGTGAAGAGACCCCTCTCCCCAGTGCCCCACATCTTTCTCTGGGAGACACTCGCGCCCCCTATCCTGGCCAGTGATGGAGGGGTATCTCTACAGGGGTCCTCGGTCTCCATCTACTTCCCTTTCTTCATGTGTTTCCAGCCCCACCCTCAGCCAGAGCCAGGCCCCCAGGCAGGAGCTTCCCAGCGAGCGGCCTCCCCTCACTTCCTCCTGGTGGTCCCGTTGTCTCTGCTGAATCAGAGCTGAGAACGGTGCCAAAATCCAACGATGCCCCCCAGGCCCCTTCCTCCCTTCCCCCGGCCCCCCGGGCCTCATGACCCTGGGGGCTGCCCCCCTCGGTGCTCCCGGAGCCTCCAGTAGAGTAGCGTCACAAGCAATCTCCCTGGCGCTTCCTGGGTGGGGACCCCTGCTCCGTCCCCGCTTCCTAGCTGCCCACTTTTCAGTGTTACGAAGCCTGGGGACCGGGGCAGGCACCCACGGGGCTCTCCACACGCCCCCTACACTGCCCGCCACCATTTTGCACACTGCCTGTTCACATGTCGCCCAGGCGGGAAAAATGGAAAATAAAGTGTATTTACACAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-EVI5L:NM_145245:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.609
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGGGCCAGCTGAAC
R:
GGGGACAGAGGATACAATGCG
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)