RnoINT0056984 @ rn6
Intron Retention
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2587891-2589873:-
Coord C1 exon
chr12:2589778-2589873
Coord A exon
chr12:2589608-2589777
Coord C2 exon
chr12:2587891-2589607
Length
170 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCCTCCCCCGCGCACTCCAGGTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
AGGGAGGAGGGCCGCATCCAGGGCCAGCTGAACCATTCGGATTCATCGCAGTACATCCGTGAGCTGAAGGACCAGATTGAGGAGCTGAAGACTGAG
Seq A exon
GTGAGAGCAAGGGATAGTGGCCACAGGCCAAACGCTGGCGCGGGGACCCAGATCAAGCTTGAAGCTAAGAGGGTAAGGGAGGAAGGCGCCTGATAGCCGGGGTTCCCTGTGGGTACGCCGATTTATGCCTCCAACCCGTGGGTGCCCCCTCCCTCCCCCGCGCACTCCAG
Seq C2 exon
GTTCGGTTGCTGAAAGGCCCACCCACATTCGAGGACCCGCTGGCTTTCGATGGGCTGAGCCTAACGCGGCACCTGGACGAGGATTCGCTACCGTCTTCTGATGAGGAGCTGCTTGGTGTGGGTGTGGGCGTGGGCGTGGGCGCAGCCCTGCAGGACCCACTCTACCCTCTGTCTCCCCGGGACGCACGCTTCTTCAGAAGTCTGGACCGGCCAGCCAAGGACAGCGAAGGCAGCTCAGACAGCGATGCAGATGAGCTAGCCACGCCTTACAGCAACCAGGTCCTGGACAACTGAAGCTGGGGGCCCACTCACTGGGAGCCTAGAGGCCCACATTGCTGTGAGGAGAGAGCAGCAGTCCATGACCTTGCTGCTCCACAGTACTAAGGAACTCTGTGCCTCTGTAACTCCCGCCAACTGAGGGCCAGGTGGAGGAGGCAGCACAGAGGGCAGGGCCTACTGGCAGGCCTGGCCCACATAGCAGTGTTTACCCGTTTTAGACCATATCGTCCAAGCCCTCCTGAGTTCAAGGGGTGCATGGGCCAGTTACCTGGAGGGTGTTGCTCTCCTAACATGGACAAGGGCCGAAAGTGCAGAGGTCCCAGGACTTGTTAATAAGCAGGGAACTTCCTCTTCCTAGTCAGCTTCCCTTTGGGACAAGGGTGGCCCTGCTGGGTGGGGCCCAGGAACTACAGTAGGTCTGAGGAAGGAGGGGTAACTTGGACTGGATATAGCACCCTAGGACAGGTTCTTTGGACACAGTGATATTGAACAGCCAGCCCCTTGCCACTGGGGACAGATGGCCAGGCTGGACTTTTCTGCCTGGTGCAGGCATCATGGTCCCTGCAGCAGAAACCAAAGTCCCCCACCCCCATCATGTCTGCAGGACCACCTGGGGTGTGAGTAGTCAGTGGGAACCAGCTTAAGCCTGGGCAGTGTCTCCCCACTCTCTAGGGCTATAGAAGCTGCAAAGAAGAGACCCTTTCCCTAGAGCACCCATCTTGCTCTGGGGAGCCCCGTATCACACGTGTTGGCTGGCTGTAGAAGAGAGCCCCCCTTGGGGAGTTCTCAGCCTCAGTTCACACATTCCTGTGGACTTACTCCACTCATTCTGGCTAGACTTCCCCCAGTCAGTTACCTCCCCTATGTCCTCGAAGTCCCCATGGTCTCTGCCCAGTCAGAGTTGAGAATGGTGCCAAAGTCCATCAGTGTTCCCCGGGCTCCTTTATCCCTCACCCCTGCATCTTGGGACCCACCCCTAGGGGCTGACCCCTCTCAGTGCTCCTAGAGCCTCAGGTAGAATGGTGCCCACAGCATTCCCTGGGTGCTTCCTAGGTGGGGCCCCCAGCTCAGTCTCCATTCCTGGTGGCCCACTCGTCAAGTGTTAAAAACGCCTGGGGGCTGGGGCAGGGTACCCCTGAGGAGGCCCTCATGTGCTCCTCATGTGCTCCTCCACACTGCCCACCACCATTTTGCACACTGCCTGTTCACACTCCATGTCTCCAAGGCAGAAAAGATGGAAAATAAAGTGTATTTACACAGTCACGGGGGACGCCGAGTAGAGCCAGAGCTGGGGCAGTCACAGCAAGAAGACGCTAAGCCCTCATCCGTGTTCTGGAAGTTCCAAGATGGATCCAGTGGCTAGGTGGTGTGGGAAATGCCACAGGGATGAAGAGAGGGCTTGAGCCTGACCAATCCAAAACTGTCAGCTTCAGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034:ENSRNOT00000001367:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTGAACCATTCGGATT
R:
CAGAGGGTAGAGTGGGTCCTG
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]