HsaINT0058474 @ hg38
Intron Retention
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7863185-7864976:+
Coord C1 exon
chr19:7863185-7863280
Coord A exon
chr19:7863281-7863423
Coord C2 exon
chr19:7863424-7864976
Length
143 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCGCCGGTCCCCCGCCCCAGGTG
3' ss Score
7.5
Exon sequences
Seq C1 exon
AGGGAGGAAGGCCGCATCCAGGGCCAGCTGAACCACTCGGACTCATCGCAGTACATCCGCGAGCTCAAGGACCAGATCGAGGAGCTGAAGGCCGAG
Seq A exon
GTGAGCCGGCGCGGGGATGCCGGGGACAGGCCTGGGTGTCGTCGGCCTGGGACGAGCCGAGCGCAGGTGCCTTGCGGAGGATGCGGCTGGGAGGGCGGGGCAGAAGGCCGGTCCACGCCTGCAGCGCCGGTCCCCCGCCCCAG
Seq C2 exon
GTGCGGCTGCTGAAGGGCCCGCCGCCCTTCGAGGACCCGCTGGCTTTCGATGGGCTGAGCCTGGCGCGGCACTTGGACGAGGACTCGCTGCCGTCGTCGGACGAGGAGCTACTTGGCGTAGGCGTGGGCGCTGCCCTGCAGGACGCATTGTACCCTCTGTCCCCGCGCGATGCGCGCTTCTTCCGCCGTCTGGAGCGGCCGGCCAAGGACAGCGAGGGCAGCTCAGACAGCGACGCCGATGAGCTGGCCGCGCCCTACAGCCAGGGTCTGGACAACTGAGGCCATGCCCAGCGCGCCCGGAGTCAGGAGGCCGCAGCCGCGGGGGGCGCCCGGGCAGTCCGCGTTCTGCTCCCCACCTGCCGCACTTGACAAACTACGCGCCCTCTGTGGCTCGGCCACCCCTAAAGCGAGGCCCGGCGAGGCAGCGCAGAGGGTAGGGTCCGACCTGGGCTCCTCAGGGCCCCGGGGCAGGCTCTCTATCCCCAGCAGTGTTTACCCATCTTGGTCTGTACCCCTCCGGGCCCTCTGGCGTTCCAGGGGTGCCTGGAGGGGCTGACTGCTCTCTTAACAGGAGGGCAGAGGGCAGGGGACAGACGACCCAGAGGTCCCAGCACTGAATGAGCAGGCAGCTCCCACCTCCTGGCAGGCTTCCTTCTGGGACAGGGGCGACATTGCTGGGAAGTGCTCAGGAGGTAGCCGAGGCCTGAGGAAGGAGAGCGCCAGCTCTGGGCTGGACATCAGCACCCCACAACACTCCTCGGGATGAAGTGACCCTTGACTAGCCCCTGGCCATCTCTAGGGGAGTCAGGCCGCTGGGGACAGATGGCCAGGCCGGCCTCTCCTGCCTGGCGCAGGCACCGTGGCCCCTGCAGCGGAAACCAAAGTCCCCCTACTATGTGCGGGGCGCCTGGGGACTGAGTGGCTAACGGGAAGCCTCCCTGCTTCTCTGGGGCCAGAGCAGCTTCCAGGAAGTGAAGAGACCCCTCTCCCCAGTGCCCCACATCTTTCTCTGGGAGACACTCGCGCCCCCTATCCTGGCCAGTGATGGAGGGGTATCTCTACAGGGGTCCTCGGTCTCCATCTACTTCCCTTTCTTCATGTGTTTCCAGCCCCACCCTCAGCCAGAGCCAGGCCCCCAGGCAGGAGCTTCCCAGCGAGCGGCCTCCCCTCACTTCCTCCTGGTGGTCCCGTTGTCTCTGCTGAATCAGAGCTGAGAACGGTGCCAAAATCCAACGATGCCCCCCAGGCCCCTTCCTCCCTTCCCCCGGCCCCCCGGGCCTCATGACCCTGGGGGCTGCCCCCCTCGGTGCTCCCGGAGCCTCCAGTAGAGTAGCGTCACAAGCAATCTCCCTGGCGCTTCCTGGGTGGGGACCCCTGCTCCGTCCCCGCTTCCTAGCTGCCCACTTTTCAGTGTTACGAAGCCTGGGGACCGGGGCAGGCACCCACGGGGCTCTCCACACGCCCCCTACACTGCCCGCCACCATTTTGCACACTGCCTGTTCACATGTCGCCCAGGCGGGAAAAATGGAAAATAAAGTGTATTTACACAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459:ENST00000270530:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGGGCCAGCTGAAC
R:
ACAGAGGGTACAATGCGTCCT
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development