BtaINT0058345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56263814-56264971:+
Coord C1 exon
chr19:56263814-56263939
Coord A exon
chr19:56263940-56264824
Coord C2 exon
chr19:56264825-56264971
Length
885 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CACTGCCTGGGTCACTGCAGGCA
3' ss Score
5.23
Exon sequences
Seq C1 exon
TTCCAGGAAGAGGCGGATTCTGTCAGCCAGACCCTGGCAAAGCTCAACTCCAGCCTGGACAGCCAGTACAGCCCTGCCCCGGAGGGCCCACCTGGTGCTCTAATGGAGATGCTGCGGCAGCTGGAG
Seq A exon
GTGAGATGGCCCCCGGCCCCTCCCCGTAGCCGCTCCTGGGCACCGGGCGGGCCTGGGTGTCTGGGCCTCATGCCTCCAGGGTGCTTAGTCCTGCCTGGATCCCCTGCCCTGAGGGCAGGAGGAGGGGCTTCACTGCAGCTGGAGGAGCCTGGTCTGTCAGCTGCAAGCCCTTCCCACCTCTGGATCTCAGTTTCCTCGCCTGTAACGTGACAGGGCTTCCCAGGTGGCGCTAGTGGTAAAGAAAGTGAAAGTCACTCAGTCGTGTCTGACTCTTCGTGACCCCAAGGACTATACAGTCCATGGAATTCTCCAGGCCAGAACAGTGGAGTGGGTAGCCTTTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATGGAACCCAGGTCTCCCGTATTGCAGGCAGATTCTTTACCAGCTGAGCCACCAGGGAAGCCCTCCTGCTTGCCAATGCAGGAGACATAAGAGATGTGGGTTTGATCCCTGGGTGGGGATGATCCCTTGGAGGAGGGCATGGCAACCTACTCCAGTATTCTTGCCTGGAGAATCCCGTGGACAGAGGAGCATGGCACGCTACAGTCCACGGGGTCACACAGAGTCAGACACGATGAAGTGACTTCGCACGCATGCACACACAGTGTGGCAGGGACTGCCCAGAAGAGCTCCGACACCCCTCCAGCTCCCACTCTGCTGGCCTGGGGGTTGGTTGCTGGGCAGCCACCTGCCCCACCCCAACCAGCAGACTCTAGGATCCTGGGTGCCTGGGGAGGGGCTCGCTTTACGTTGCTGACTAAGAGACCCTGTCTTCATGACGGCCAGGACCCCTTCCTGGCCCTCCTGGGGGGCACAGGTGGGTTGGTCTGAGCCTCCACTGCCTGGGTCACTGCAG
Seq C2 exon
GCAGAGGAGAAGCAGCTGACCATGGCCGAAAAGACTCTCAAGGACCTGCAGCTGCAAAGCCAGGGGGTGGCCCCTCTGCCCCAGAGAAGGAACCTGCCCCTGCAGCCCCTGCGTGTGGACAGCATCTGTGACTGGGACTCAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGAAGAGGCGGATTCT
R:
CTCCTGAGTCCCAGTCACAGA
Band lengths:
271-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]