GgaINT0128795 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4536720-4537732:+
Coord C1 exon
chr18:4536720-4536845
Coord A exon
chr18:4536846-4537585
Coord C2 exon
chr18:4537586-4537732
Length
740 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTCTCCCCTGCTTTGTTCAGAAT
3' ss Score
7.36
Exon sequences
Seq C1 exon
TTCCAGGATGATGCTGAGACTGTGAGCCGCTCCCTGAAGAAGATGAGCTCCGATCTGGACACCAAATACACCAAGTTCAACAAAGACAGCCCTGGCGTGGTGTCAGATCTGCTGCTCCATCTGGAG
Seq A exon
GTGAGGTCTTTAGGACCGGTGGCACCATCCAGACTTGAAGAGATTGTGCATCTCTGGCGCAAAAATGCTATGGCTTCATCCCTAAATAAGAGTGGGGAATGGGAAGAGGTGGGGAATGACCCTGCTGGGGCAGCTCCTCTCACCTCAATGCCACCAAGAGCAAGGAAGGGAAGAGAGAAGTCTGACCTCAGGGGAGAGGTGCAGGTTGGAAAGGAACGTTTGCCTGGGAGAGAGGGAAGGGATACATCCAATGAGGGATCTTCCCATACATTTCACTGCCAAGAGGTGCTGGGATCTCAGGAACTTCTGACGCTGGAATGCAGTTGCCTTTTGGCAAGTCTCTGCTCCTCGTCTGAAAAGCAAAACATCCCTAAGAGGTTTAATATGAGCCTGTGTGATCACCAAAGGTTAACTCAGGCTGTCCCTCCAAGGGCAGATGTGCTGGGAGGGAAGGAAATAGAGAAGAGTGGTGATATATGTTTACTGAGGGATGTGGTTTAGTGGTATGGTGGGGATGGGCTGGTGATTGGGCCGGATGATCTTAGAGATCTTTTCCAACCTTAATGATTCTGTGATAACAAAAAGGGAGAGGAGGGGACACCAAGGGTTCAAGAATGGAGAAGCTTCTGCCTCCATCGTATCAGTGAACACACGAGGATGGAGAACTGTCCCCCCCAGGGACCCACTGCTGTGCAATCCCTTCCTCTTCATTTAAGCACTGTCTCCCCTGCTTTGTTCAG
Seq C2 exon
AATGATGAGAAGGCAGTGAAGCAGGCGGAGAAGAGCATTGCTGACCTGAAAAAGAGGAGCAAGGAGATCAGTCCTCTGAAACTGCGCAGGATGCGTTCCTCCCAGCCCCTCACCTTGGACACCCTGTGTGACTGGGATGCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.245
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGATGATGCTGAGACTGT
R:
CTCTCCTGCATCCCAGTCACA
Band lengths:
272-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]