RnoINT0057005 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105109759-105110403:-
Coord C1 exon
chr10:105110278-105110403
Coord A exon
chr10:105109906-105110277
Coord C2 exon
chr10:105109759-105109905
Length
372 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGTTGTCTGGGTCCCAATAGGCA
3' ss Score
8.43
Exon sequences
Seq C1 exon
TTCCAGGAAGAGGCCGACTCAGCCAGCCAGACCCTGGCAAAGCTCAGCTCCAACCTGGACACCAAGTACAGCTTTGGCGCTGGGGACTCCTCTGTCTCCCCAACAGAGCTCCTGCTACAGCTGGAG
Seq A exon
GTGAGACAGTCCCACTGGGCCATCTGCATCCTGCCCCTGGCTTAGAGCTTTCTCTCTAGAAAAGAAGTCCCCAGTGCAGCCCTAAACCCCCAGGAGAAGAGGTTGCTGCAGCAGGAGCCCTGACCCTCCTACACTTTGCTATGCTATCTGTAACGTGACCTGAGAAGCCTGGACGAGCTCTGAGGTCCCCACAGCTTCCTCCCCGAGGCCCGTGTGATATTAGCCAGCATCCGTACCCTCCGTCCATCTACAGTCTGACTTAGCTTCTCCCCAGAGGAAGGCCACACTCCCTTTGGGAGATGGGAAGGAGGCAGGAGGTGGCTTCTATCCCACCCTGACCGACCTGAGCTGCTGTTGTCTGGGTCCCAATAG
Seq C2 exon
GCAGAGGAGAAGCAGCTGGCCATAGCAGAGAGGACTATTGGAGAGCTGCAGCGACGAAGCCAGGAGGTGGCCCCGCTGCCACAGCGCAGGAACCCACCCAAGCAGCCCCTGCACGTGGACAGCATCTGTGACTGGGACTCCGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.551
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGAAGAGGCCGACTC
R:
TTCTCCGGAGTCCCAGTCAC
Band lengths:
273-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]