HsaINT0058496 @ hg38
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr17:76018914-76019653:-
Coord C1 exon
chr17:76019528-76019653
Coord A exon
chr17:76019061-76019527
Coord C2 exon
chr17:76018914-76019060
Length
467 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTGCCTGGGCCCCCGGCAGGCA
3' ss Score
5.54
Exon sequences
Seq C1 exon
TTCCAGGAAGAGGCCGACTCAGTCAGCCAGACCCTGGCGAAGCTCAACTCCAACTTGGATGCCAAGTACAGCCCTGCACCTGGGGGCCCCCCTGGCGCCCCCACAGAGCTGCTGCAACAGCTGGAG
Seq A exon
GTGAGACAACCCCACCAGGCCGTCTGCACCCCACTTCTGGGAATTGGTCCTGTCCATTTTTCTGGGCCTCACCCCTTCTGCCTTGGTACCTAGTCCTATCCCAAGCCCTGGCCTGGGTGCTGGCAGGGGGGTTTACTCTAGCAGGAGGCTGGCCAGGTACCAGCAAGCTCCTCCCACTTCTGGACGTCAGTTTCCTCATTTGCAGTGGGACAAGGGCAGCCTGGGAGAGCTCTGAGGCCTGTCTAGCTTCTGCTTGGTGGCCTGGGTGATGCTGTGCCATCCCCCTCCCTGCAACTAGCAGATCCCAGGATCCTAGGTCCCCCAGAGAGGGGCTCCTTTTACTTTGCTGACTTAGAGACCCCTGCCTTCATGAAGGCCAGCCTCTAGGCCTTTTGAAGGACAGGTATGGTGTGGCCAGCCTCCAATGCAGCCTGGCCTGAGTCCCCCACTGCCTGGGCCCCCGGCAG
Seq C2 exon
GCAGAGGAAAAACGGCTGGCCGTCACCGAGAGGGCCACTGGGGACCTGCAGCGGCGAAGCCGGGATGTGGCCCCTCTGCCACAGCGAAGAAACCCCCCTCAGCAGCCCCTGCACGTGGACAGCATCTGCGACTGGGACTCAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880:ENST00000301607:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGAAGAGGCCGACTC
R:
TTCTCCTGAGTCCCAGTCGC
Band lengths:
273-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development