BtaINT0058348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56265597-56266159:+
Coord C1 exon
chr19:56265597-56265694
Coord A exon
chr19:56265695-56265986
Coord C2 exon
chr19:56265987-56266159
Length
292 bp
Sequences
Splice sites
5' ss Seq
AGGGTACTG
5' ss Score
4.5
3' ss Seq
GAGGCACTCTCTTCCCCCAGCTC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GCTTGCCTCGGAGCTGCAGGCACTGAAGCAGAAACTGACCGCAGTCCAGAGCCGCCTGAAGGCCAGTGCCAAGGAGCCCTTACGGCCCAGCCAGCAGG
Seq A exon
GTACTGAGGGATGGCCAGGGAAAGAGGGAGGCATTGTTGAAATAGGAGTAGATGCCTACTCTGGTCACCCAGGGGCTGCCACGGGCAGGGGGTGACCCTGAATTAAAGGCTCTGATCTGGGGGTTCCATTCCCTGGGTTGGCAAGCCTGATGTCCCTCCCTCAGTGAGGCCCTGCCCACCACCCTCCCCCACATGGGACCCTCTGCGGGGGCTCATGGAGGGGCCCAGCAGGCAGGCAGGCAGGCAGACACGAGGCAGGCCCTGGACCCTCAGAGGCACTCTCTTCCCCCAG
Seq C2 exon
CTCCAAGCAGCTCGGGCCCACCCGACCCACAGGCCCAGAAGCTCCTGACACAGATGACCCGGCTGGAGGAGGACCTGGGGCAGATAGAGAAGCAGCTGCTGGCTTGGGCACGGGCCCCGCTGAGCCGCACCACACCACTCGAGGACCTCGAGGGCCGCATCCAGAACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTCGGAGCTGCAG
R:
CTGGTGGTTCTGGATGCGG
Band lengths:
270-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]