MmuINT0059569 @ mm9
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116090715-116091156:-
Coord C1 exon
chr11:116091059-116091156
Coord A exon
chr11:116090888-116091058
Coord C2 exon
chr11:116090715-116090887
Length
171 bp
Sequences
Splice sites
5' ss Seq
AGGGTACCA
5' ss Score
2.81
3' ss Seq
ACTAGCACTTCTGTCCCCAGCTC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCTGGCCACGGAGCTGCAGACCCTGAAGCAGAAGCTGTCTACAGAGAAGAACCGCCTGAAGGCTGCTGCTGTGGAACACTTACAGCCTGGCCAGCAGG
Seq A exon
GTACCAGAGGATGGTCAGGGAGGGCCAATGGGTGGGCGTGCTGGGTAGGAGGTACTCCATCTAGACTCTTCTTCCCTCAGTCAGGCCCTGCCCACCCTCCAGGTCCCGCAGGCACCCAGGGAGGGCCCATCTCAGGCAGACATAAGACCTCACTAGCACTTCTGTCCCCAG
Seq C2 exon
CTCCGGCAGGCTCAGCCCCCGCTGACCCACAAGGTCAGACGCTCCTGTCACAGATGACCCAGCTGGATGGGGATCTGGGGCAGATAGAGAGGCAGGTGCTGAGCTGGGCCCGGAGCCCACTGAGCCAGTCTTCTTCACTGAAGGACCTCGAGGGCCGCATCCACAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-Evpl:NM_025276:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGACCCTGAAGCAGAAG
R:
CTCACAGCTGTGGATGCGG
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: