GgaINT0128798 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4538724-4539467:+
Coord C1 exon
chr18:4538724-4538821
Coord A exon
chr18:4538822-4539285
Coord C2 exon
chr18:4539286-4539467
Length
464 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CAAGTTGTGTCTCACTGCAGTGC
3' ss Score
6.67
Exon sequences
Seq C1 exon
GCTGGAAGGGGAGCTGAATGCAGTGAAGCAGAAGCGAGCAGCAGCTCAGAGCATGCTGAGGCGCAGCCATAAGGAGACGGTCCAGCCCAGCCAGCAGG
Seq A exon
GTACGTGTGCTTGCACCCCTCCCCGTGCATCCCTTCAGCCAGCACACATTGGGCAGCCTGGTTGGCATTGGGATGCCTTGTGTCCTCCCAAAAGGAGCAGCGATGGAGTGACACAGGTCCAAGAACTTGACAACCTTGGGCACTTCAATTCCCTGCTGCCCTTCTCGGATTTCTGAGTCTGACCTTCAGCTCCACTGACAGTTTTAGGGTATTTAGGGTTAATGGAGGATGTACCTATCATAATCTTAATGAAGCTTTCTTTGGGGTTGGGTCTCTTCAGTACCTGAGGGATATGGGATAAGGAGGTAATGATGGCGAAATCCCAACCCTTGGATAGCTGTCATGAGAGAAGTAGTTGGAGCTCTGGGGATTGTGCCTGGGAGAGCTCAGGGGGACAGTCTGTGTCCCAGGACTGGGATGGAAGATGTGCAGTCAGACTGAACCCAAGTTGTGTCTCACTGCAG
Seq C2 exon
TGCTGCCCAAGAGCACCCCTGTAGTCCAGGATGACCCGCAAGCCGACCAGCTTCTGGGTAGCCTGGATCGTGTTGGCAAGGACCTGGTCCAGGTAGAGAAGGAGGTCCTGAACCGAGTGAGGTCCCCAGTGAGCTACACTGACCCCACGGACGACCTGGCCAGGAGGATCAAACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.721
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGGGGAGCTGAATG
R:
GCTGCTGTTTGATCCTCCTGG
Band lengths:
278-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]