GgaINT0128798 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:4554650-4555393:+
Coord C1 exon
chr18:4554650-4554747
Coord A exon
chr18:4554748-4555235
Coord C2 exon
chr18:4555236-4555393
Length
488 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
GCCCAAGAGCACCCCTGTAGTCC
3' ss Score
-5.63
Exon sequences
Seq C1 exon
GCTGGAAGGGGAGCTGAATGCAGTGAAGCAGAAGCGAGCAGCAGCTCAGAGCATGCTGAGGCGCAGCCATAAGGAGACGGTCCAGCCCAGCCAGCAGG
Seq A exon
GTACGTGTGCTTGCACCCCTCCCCGTGCATCCCTTCAGCCAGCACACATTGGGCAGCCTGGTTGGCATTGGGATGCCTTGTGTCCTCCCAAAAGGAGCAGCGATGGAGTGACACAGGTCCAAGAACTTGACAACCTTGGGCACTTCAATTCCCTGCTGCCCTTCTCGGATTTCTGAGTCTGACCTTCAGCTCCACTGACAGTTTTAGGGTATTTAGGGTTAATGGAGGATGTACCTATCATAATCTTAATGAAGCTTTCTTTGGGGTTGGGTCTCTTCAGTACCTGAGGGATATGGGATAAGGAGGTAATGATGGCGAAATCCCAACCCTTGGATAGCTGTCATGAGAGAAGTAGTTGGAGCTCTGGGGATTGTGCCTGGGAGAGCTCAGGGGGACAGTCTGTGTCCCAGGACTGGGATGGAAGATGTGCAGTCAGACTGAACCCAAGTTGTGTCTCACTGCAGTGCTGCCCAAGAGCACCCCTGTAG
Seq C2 exon
TCCAGGATGACCCGCAAGCCGACCAGCTTCTGGGTAGCCTGGATCGTGTTGGCAAGGACCTGGTCCAGGTAGAGAAGGAGGTCCTGAACCGAGTGAGGTCCCCAGTGAGCTACACTGACCCCACGGACGACCTGGCCAGGAGGATCAAACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGGGGAGCTGAATG
R:
GCTGCTGTTTGATCCTCCTGG
Band lengths:
254-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]