RnoINT0057008 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105108727-105109198:-
Coord C1 exon
chr10:105109101-105109198
Coord A exon
chr10:105108900-105109100
Coord C2 exon
chr10:105108727-105108899
Length
201 bp
Sequences
Splice sites
5' ss Seq
AGGGTACCA
5' ss Score
2.81
3' ss Seq
ACTAGTGTTTCTGTCCCCAGCTC
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTTGGCCTCCGAGCTGCAGACCCTGAAGCAGAAGCTGTCTACAGAGAAGAGTCGTCTCAAGAATGCTTCAGCAGAGCACTTACAGCAGGGCCAGCAGG
Seq A exon
GTACCAGAGGATGTCCAGGGAGGGCACTGGTGGGTGGGCCGTGCCGGGTAGAAGGTATTCCATCTCTACGACTAGACTATTCTTCCCTCAGTGAGGCCCTCCCCATCCTTCAGGTCCCCCCACATCCTGCAGGCACCCAGGGAGGGCCCATGTCAGGCAGACATAGTAGGCTTGGAACCTCACTAGTGTTTCTGTCCCCAG
Seq C2 exon
CTCCGGCAGGCTCAGCCCCGGCTGACCCACAGGCTCAGAAGCTCCTGTCACAGATGACCCAGCTGGATGGGGATCTGGGACAGGTAGAGAGGCAGGTGCTGAGCTGGGCTCGGAGCCCGTTGAACGACTCTTCTCCACTGAAGGACCTAGAGGGCCGAATCCAGAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=NA C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCTCCGAGCTGCAG
R:
CTCACAGCTCTGGATTCGGC
Band lengths:
270-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]