BtaINT0060347 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99543393-99544373:+
Coord C1 exon
chr11:99543393-99543493
Coord A exon
chr11:99543494-99544257
Coord C2 exon
chr11:99544258-99544373
Length
764 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
CACGTGCCCCGCCCCCCCAGCTC
3' ss Score
8.23
Exon sequences
Seq C1 exon
AGCGGACCCTCATGCTGCCCCTGACGGAGGGATCACTGCGTCTGCGGGCGGACGATGGGGACAGCCTGACCTCGGAAGATTCCTTCTTCTCCGCCACCGAG
Seq A exon
GTGATGCAGGCGGGGGGATGGCTTCGGGGAGGGGGTGAAGGCCAGGGGGCCCCTGTCGGCTCTGCTGGGGGCCAGCGATGGGTCGTGGGAAAGTGAAGGCATTTCCTCTGGTGGAAGCAGAATCTGGCAGTCGCCAAGTGTTCCTCCCCGGGGACTCTTCAGCTGGGACAGGGAAGCCTGGGAAAGCAGGAGCTGTAGGTCCCGTGAGTGAGGGCAGGGGTCCCTGACCCCAGCGGCTGCAGCCATGCCGGCCTCTCCCTTCTCCAGGCCTCGTGCTCGTGGCTTGGCGTTAGTTTCCTGCCATGGCCACGTGTACCAGGTGGCTGTCCTTCCCTGGGATGGGAGGACATGGGCCTGTGTCCAAGAGATGGTCCCTATGGGAAAGGTCCCCATGGGAAAGGAGGAGAAGGGGATGACAGAGGATGAAATGGGTGGATGGCATCACTGACTTGATGGACATGAGTCTCAGTAAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCAGTCCATGGGGTTGCAGAAAGCTGGACACAACTGCGCGGCTGCACTGAGCTGGTGGGAAAGGCACCTGGTGGTGGGGACGCTGAGCAGGAGGGGACTGCGATCCGGCCTCTGCCCTTGGCCAGGGTTCCTGCTGACATCCCCTCAGAGAGCTTGGACCCTAGGGCATCCCCTGCCGGAAGTTCCCCAGGCAGGCACCCTCCCCTACACTCATGCGGCTGACACAGGCTTCCACGTGCCCCGCCCCCCCAG
Seq C2 exon
CTCTTTGAGTCCCTGCAGGTCGGAGATTACCCAATCCCACTCTCCAGGCCCGCTGCCGCCTACGAGGAGGCCCTGCAGCTGGTAAAGGAGGGCAAAGTCCCCTGCCGGACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653:ENSBTAT00000014090:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTCATGCTGCCCCT
R:
TCCGGCAGGGGACTTTGC
Band lengths:
206-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development