DreINT0066873 @ danRer10
Intron Retention
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3707053-3707838:+
Coord C1 exon
chr21:3707053-3707159
Coord A exon
chr21:3707160-3707725
Coord C2 exon
chr21:3707726-3707838
Length
566 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
TTCCCTTTCTGGTTTTGCAGTTG
3' ss Score
9.67
Exon sequences
Seq C1 exon
AAAGTGAAGGCACGCTGATTTTGCCCACTCTGGGAAGTTCACACCCCATCCAGGATGACGATGCCACGACGGTCACATCGGACGACTCGTTTTTCTCTGCTGCTGAG
Seq A exon
GTCAGAAAACAGTGTCATTAAACCTGCATTTATTCTTACTTACATTTCTTTGCCATGATGACAGCACATAATATTTGACTAGATATTTTTTAAGACACTAGTATTCAGCTTAATGTGACATTTAAAGGCTTAACTAGGTTAATTAGGCAATTCATTGTATAACAGTGGTTGGTTCTGTTGACAATCCAAAGCAAATATTGCTTAAAAAGAGCTAATAATATGGACCTTAAAATGGTTTATAAAAATTAAAAACTGTTCTTGTCGAAATAAAACAAATAAGACTTCCTCCAGAAGAAAAAATAATATAGGAATTACTGTGAAAATTTTCTGAATTAAAACATCATCTGAGAAATATAAAAATAATATAATAATAATGAGCTTTCCCAGTGATGGTTGCAGCTGGAAGGTCATCCGCTGCGTAAAACATATGCTAGATAAGTTGGCGATTTATTCCGCTGTGGCGACCCCAGATTAATAAAGGGACTAAACCAAAAAGAAAATCTAATCTAAGCTACTAATTGTGACTTCAACTGTATGTGATGTCACTTCCCTTTCTGGTTTTGCAG
Seq C2 exon
TTGTTTGAGACGTTTTCTCTTGAGGACTCGTTTCATCTGCTGAAGCCGGCCGCTCTCTATGAAGAAGCTCTGAGTTTGGTGAAAGATGGAGACGTGGCCTGCAGATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357:ENSDART00000122699:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.7=100)
A:
NA
C2:
PF102654=DUF2217=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGCACGCTGATTTTGC
R:
CTCAGTGATCTGCAGGCCAC
Band lengths:
217-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]