GgaINT1012991 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5466721-5467515:+
Coord C1 exon
chr17:5466721-5466821
Coord A exon
chr17:5466822-5467399
Coord C2 exon
chr17:5467400-5467515
Length
578 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GCTTCTTGCTACTGTTACAGCTC
3' ss Score
7.59
Exon sequences
Seq C1 exon
AGAAGACTTTAATGCTTCCATTGACGGATGGGTCATTACGGCTTCGGACAGATGATGAAGACAGCTCAATTTCTGAGGACTCCTTCTTCTCTGCAGCAGAG
Seq A exon
GTAACTTCAGTTCCTGCTGTGTGTAGCAGAGCAGCTGCTTGGAGGGAAGCCACGAAGACAGTGGAGCCAATCACATCTTAATAGGGGAAGATGATAACCTGGGGCTGTTGCTCCATGTTTTGGATAGATGTTAGGAAGAGATTTTTCATTAGGGTGATGGTGCAGCCCTCCCCAGAAAGATCAGGAGATCTCATTAGGTGGAGGCTTTCAAGGCTTGCCCAGAACAAACCATAACTGACCTGATCTAGTGTGGGTAACCATTCTACTTTAAGTGGGAGGCTGGAGGTCCTTTTCAACCAATATTTGCAGGTCATCTTCCAATCTACAGTAGAAAACATGCTAAAACAGGTAGGAATATGCTGTATATCTAATGTAATGTGGCTTGGTTTTGTATTTTTAGGGAATACTGAGCTGTGTGAAACTGGTAGGAAGGAAAATATCTTTGCATGAAATAATTGGGACTGACAAAAGTTTGCCAGCTAAAGAAGGAATGTCTTGCTTGTGTGCAGTCCCCAAGTATTTACAAATATTTAATGAGATCATCTGTTTTTTTCCCATGCTTCTTGCTACTGTTACAG
Seq C2 exon
CTCTTTGACTCTCTTCACTTTGAGGAAATACCATACCACCTATCAAGGCCGGTAGCAGCATATGAAGAAGCCCTGCAGTTAGTGAAAGAAGGGAAGGTTGCATGCCGGACGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTTAATGCTTCCATTGACGGA
R:
CTCAACGTCCGGCATGCAA
Band lengths:
214-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]