MmuINT0062074 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30232166-30233114:+
Coord C1 exon
chr2:30232166-30232266
Coord A exon
chr2:30232267-30232998
Coord C2 exon
chr2:30232999-30233114
Length
732 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CCTCCTTGGCTCTTTCCCAGATC
3' ss Score
8.65
Exon sequences
Seq C1 exon
AGAGGACCCTAATGCTGCCACTGACTGAGGGCTCACTGCGACTTCGAGCTGACGATGAGGACAGCCTGACCTCTGAAGACTCCTTTTTCTCAGCCACTGAG
Seq A exon
GTAAATAGGTTGGGAGACCAAGTTGGGGGGCCAGGTCCTCTGGGCCAGGACTGGGTTGTGTGTGTGTGGGGAGTAAGGTTATTTTCTTGGGTGGGAATGAAGCCCTGCTTTCCAAATACTCTGAAGTTCCCAGGTCAGGAGGCCTGAGAGGCCCGGGTTATAGTTCTACATGGTCAAGCAGAGATATCCGGCCCCTCCCATCCCTAGGGCTCTAAACTGCACCCACCTCTGGCTTCTCTAATTCATTTAGTCCTTTGGTTAGCATTAGTCTGCCACCAGGCTGGGGCAGGGGGGATGGTATCTGTGCTTGGGACAGGAAGATGAGAGCATGTGTTTAGCAGATGTTCTCTTTCAGAAGGGATCCTAGCAGTAGAAGAGCTGAGGTCCAGGGCTGGACATGAACCTAGGCCTCCTGTCTCATGGGGCCAGTGTGCTTCATGATGGGCCAAAGGAAGGCACCTAGGGTGGTCCCTGTTGCTGGGACCCAGAGCTCTGCCCTGTGTAGGGCGATGCTCACTGGCCTCTGTAGGGCGATGCTCACTGGTCTCTGTGGGGCGATGCTCACTGGTCTCTGTGGGGCGATGCTCACTGGTCTCTGTGGGGCGATGCTCACTGGTCTCTGTGGGGCGATGCTCACTGGTCTCTGTGGGGTGATGCTCACTGGTCTCTGTGGGGTGATGCTCACTGGTCTCTGTGGGGTGATGCTCACTGGCCTCCTTGGCTCTTTCCCAG
Seq C2 exon
ATCTTTGAGTCCCTGCAGATCGGCGAGTACCCGCTTCCTCTCTCCAGGCCTGCTGCTGCCTACGAGGAGGCTCTGCAGCTGGTGAAGGAAGGAAGAGTCCCTTGCCGAACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACCCTAATGCTGCCAC
R:
AGTGTTCGGCAAGGGACTCTT
Band lengths:
214-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: