HsaINT0061444 @ hg19
Intron Retention
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131822829-131823625:+
Coord C1 exon
chr9:131822829-131822929
Coord A exon
chr9:131822930-131823509
Coord C2 exon
chr9:131823510-131823625
Length
580 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
TCCTCTGCACCCTCTCCCAGCTC
3' ss Score
7.96
Exon sequences
Seq C1 exon
AGAGGACCCTCATGCTGCCCCTGACCGAGGGCTCGCTGCGGCTGCGGGCGGACGATGAGGACAGCCTGACTTCAGAGGATTCCTTCTTCTCCGCCACCGAG
Seq A exon
GTGACTCGGGGTGGGGACCAAGCCTGGGGTGGGGTGAAGGCTGGGCCTCCTCTGCAGGTCCATGGGGCCAGCACTGGGTCATGGGAAAGTGGAGGCATTTCCTCTGATGGGAGAATTTGGATGCTCCCACGGGCCTCCTCGAAGCTGTTGGGGATGGGGGGTGCTGAGAAATCGGGGGCTGTTGTCCTGTGGGTGAGAGCAGGGGTTCCACCCCGAAGGGCTCCAGCCCGTGCTGGCCTTTCCCTTCTCCAGACCGCTGTGCCCATTGTTTGGCCTCAGTCTCCTGCCATGGGCACATGGATCAGGCACTGTGTCCTTCCTTGGGATGGGAGGACATGCACATGTGTCCTTTAGATGGCCTTTTTGGGAGGGACCCCTGGAGATGGGGATGCTGAGGGCCAGAACTGGGCTCGAACTGGAGCCTCCTGGCCAGTGTTCCCTCTGACATCCCCTCAGAGACGTTGGCAGTGGGCAGGCACCTGGGGTGGCCGCTGTGGCCGACCAATGGGCAGGTGCCCTTGCGCCGTGGCGTGCTGCTCACATGGGCTTCCCTGGTCTCTTCCTCTGCACCCTCTCCCAG
Seq C2 exon
CTCTTTGAGTCCCTGCAGACTGGAGATTACCCGATCCCACTCTCCAGACCCGCCGCTGCCTATGAGGAGGCCCTGCAGCTGGTGAAGGAGGGGAGAGTGCCTTGCCGGACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-FAM73B:NM_032809:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.6=100)
A:
NA
C2:
PF102654=DUF2217=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACCCTCATGCTGCC
R:
CTGAGGGTCCGGCAAGGC
Band lengths:
217-797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)