BtaINT0061053 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62140103-62142171:+
Coord C1 exon
chr10:62140103-62140277
Coord A exon
chr10:62140278-62141461
Coord C2 exon
chr10:62141462-62142171
Length
1184 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GTTGCCATATGTCTTTCCAGGAT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GCACTGTGTTTCTGGAATGGGCATGGGCCGGGGAAACCCAGAGCCACCTGCCAGCGGTGAAATGGATGACAACTCACTCTCCCCAGAGGCTTGTTATGAGTGTAAGATCAACGGCTACCCCAAACGCGGCAGGAAGCGGAGAAGCGCAAATGAAACAGATGCCTCCAACATTGAG
Seq A exon
GTGGGTCAGAAGGTGGTTTCTCCCGATGCCTCCTATTGCAGAAAGGCCCTCCAGATTTCTGTGGTTTCCTCCAAGGATGCTCCAAAGTGTGAAAAAGCTCCCTGGGGAGAAAATCCAGACATTCCCTGAGCTCTAGGCTGCATTTTACAAGAATCTGTGAGGCTCTCTGGAGTTTCTTGCTGCCTTTAGGGAGTGGCCATTCAAAGGTTTTCACATACTTGCTCATTTCCTCTGTCTCGCCAAAAAGAAAGTTAAACACCCGCCCAAAGTCTGATGAAAGGACAAGGTCTGAGATCCAGGAGAGCAAGTGGGCAGAGCAGTGAAGTGACATAGTGCTCCGTACACAGGGATGCCAAGTTCTGAAAGCTAGAGGCTTCTCTACCGAAAGAGCCATGTGGAGTGTGAGGGAACTTGGATTCTAGACAAAAACAACATGGAGCTCCAGCAGCCTGGATTTCTTTGCCTACGGCTGCTGCAGCCTTTCAGTCAACTTAGAAACGCAGATACTCAGACCTCTGGCTGCAGGCCCGGAGAGCAAGCACATGTGGTCCCAGAGAGGCAAGCAAGAAGCCAGGTGAAAAGCATTGAATATTAGCAGATCATCAGAGCCAGGAAGTAGGTTCATAGGTGTGTCCTTTGGTGAGATGGTTTTGCGTCAGTGAACAAAATGGAAATAAACTGGTTCTTTCTTAGTATTGGTGCTGCAACCCATCCGTTGTGGTTTGGGAAATGAGATAAGTCTTTGAAAAGAAAATAATATATTAAAACAGTCATTCTCAAACTTGAATATGCATCTGAATCATCATCTGGAAGGCCTGCTAAAATGGATTTCTGGGAAATATCCCCAGGGTTTCGGATTCAGTAGGTCTCAGGTGGCACCAAGAACTTCCATCTCTAACAGATGCCCAGATGATGCTGATACTGTCGGTTGGGGGACACTTTGAGACCCACTGCAATAGAAGACCAAATACAAGTGATTTCAACTTCCTTCTTGACATGTTTAGTATTACAAATATGTGCTAATGTAACACTGTGGCTTAAACAGGATTTTATGAATATTCATTTTCAATAGAGTATATGCAACATGAGAAGAAAGTTGTATTTGAGTGAGACTTGAGTCACTTTTTCTTTAGTAAGTGGCATATTTACCTTTTATATTCACACGTTGCCATATGTCTTTCCAG
Seq C2 exon
GATCAACCTGAGATAGAAGCCAATGTGAGTCTTGCAAGTTGGGATGTTGAGAAGACAGCCGTGTTCGCTTTCAATATTTCCCACATCAGTAACAAGGTCCGAATCCTAGAACTCCTTCCAGCCCTCACGACTCTGACGAATCACAACAGATACTTGATTGAATCTGGAAATGAAAACGGCTTCTTTAAAATCAACCAAAAGGAAGGGATCAGCTACCTCCACTTCACAAAGAAGAAGCCAGTGGCTGGAACCTATTCATTACAAATCAGTAGTACTCCACTTTATAAAAAGAAAGAACTTAATCAGCTAGAAGATAAATATGACAAAGACTACCTCAGTGGTGAACTGGGTGATAATCTGAAGATGAAAATTCAGATTTTGCTTCATTAATTCACCATCCAGAGACCAAATAATTAAAAAACCAAGATAGATAGGTAGAACTGAATTTTTCCCCCAATCAGAATCTTCATATTATAGGTACAGTCTTTCACCACGTAAATTTCTATAAATAAGCACTATTCTTGTATTACAAAAGCAAGGTACAGGTGAATACCCTAGTTCAAAACAACCACTTTCTCAGGCTTCTCATGTATGTAGCTAAGCTACCTTGTCATATGTGTTGATTCTTGAAAACTGGGACATGTATTTCCACTGGGGGTTGGCCATTCATGCTGACATGCCATCCTTCTAGCAGACGTACAGGAACGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278:ENSBTAT00000002944:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(5.1=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGGTGAAATGGATGACA
R:
TGGAGGTAGCTGATCCCTTCC
Band lengths:
346-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development