GgaINT0027950 @ galGal4
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9669985-9675981:-
Coord C1 exon
chr10:9675807-9675981
Coord A exon
chr10:9673424-9675806
Coord C2 exon
chr10:9669985-9673423
Length
2383 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CATCATTTGTTCTTGTGCAGGAT
3' ss Score
9.54
Exon sequences
Seq C1 exon
ACACTGTGTTTCTGGAGTTGGGCTAGGCAAAGGTCAAGGACAAGAGCTTTCACTCAGCGGAGAAATGGATGACAACTCCCTGTCTCCAGAAGCTTGCTATGAATGTAAAATCAATGGCTATCCCAAGAGAGGAAGGAAGCGCAGAAGTACTAATGAAACTGCAAATGAAGCAGAG
Seq A exon
GTAATTGACCCTCTGGGGAGGGAAAGGGTTTGGTGTTATCTTGTGAAAGGCAGTCTTGGATTGATGAATGCCAAGAAGCAATCGCATGGGAAAAAAATATACCCCAAAGTAAACAAAGGTCCAGGTTTTGGACATCAGGTGTCTGGGACAGGGCTTTCTGAAATTGTTCTGTTACTGTCAGGCGAAGGTTGTCCCCTGCAGCCCTTTGATTCCTACTACCTAGGGTGCATCCAACACTAAAATAAACACCCACCCAGCTATCCTGAGCGCAGTGCTCTCACTTGCAAAACAGGCTCTTGATTTTAGAGGGTGACAGGTATGTAAAACATTTGTGTGACCTTGTGGCCAGAAAGGCAGTATGTGTTGGACAGGGTGGATGGTGACCCCTCCAAGCAGGACCATGTTGTATCTGGGTCTGGAGCTCACACCAAAGCAAACACAGAGCTCTGGATGTGAACATTGGACTTCGAGGGAGCTGCAGCTCTTCCTGGGACTCGTCCACACTCTCACAGTCACTCAGGCTGCCAGCCTGGGGGCAAAACTGTTGGTGAGGTCATGTATTCTGCTCATTGCTGGTCCAGGCAGACTTAGGGAGGCTGAGCTTCATCTGTCATCACCTGCAAGTTGCTAGGGACCGAGGCAGGTTTCTGTTTGCCTCTCAGTGGGATAACTGTGTGCCAGTGAATGTGTAAAACCTATTGCAGTGCTCACCCAACTCCACTTCTTCCTAGCTGTTGTCATTAGTTTCTTTTATATTAACCAAACATTAACAAGTGGTTTCAGCACCCATATTTATATGAAAACTTATCTGCTGTGTGACAGGTTTTATCTTTCTGTGAAGAGGAAGGCATCCTTTTTCATTCTGGAGGGAGATATTCATTCATCCTGGAGGGAGATATTTTCCCTTCATTCTTGGCAAATGTTTTGAGAAATAACATTAATGAAAAGTAAATCCTTTACCAAACCCCACTTGCTGGAGTTTGTTCTGTATTGCTCACTGGGACACAATGTGATCGAGGTGGTTTTAATTGTGTTTGTTCTTCCACTGAGCTTGCCACACATTGTCCAAAAGTCTCTCTTCTCCCAGCATGAATGCAGAAGTTGTGGTAGAAGTGCAATCTTATAATAGTCCCTTGCATTACCTGAGGCTTATTTTATCTTGGAATACAAGGTCAGAATGCCCAGTTGAGTCATTCAGTCCAATGTCCTGCACAAGTCACTACACTTAAATCTTTTTCCCACCAATTAAATGTAGACTTTACAAACAATAAACAGCTTGCAGGAGAAATGTCCCCAAGTCCACAGTCATTCAACTTCTCACTTCTTCATCCATTCTATGGTGACAGCGATGTTAGGGATGAAGTGTTCTGACCTGATCTGGCCGGAGAAGCAGCAGGTCATGGGAGGTGTCAACTGCAGTATTCAGCTAAATGTATGTGTCCACGTATGTAAATGCGTGTTTCATTCAGAATTTAATCCAGAGACACTGAACACTCTTGTACAAAAGTGCTGTTAGACTGTCACTACCCTGAGCAGCCATGTGTGTTCTCTGCTCACATGTATATGTGATAGAGCTTGCTTTTCCATACATGAATACAGCAGATCCAGGGGCAAGTTAGCTGTTTCTATTCTGTGCTCAGTGTATGGCTCTGCTAACTCAGGAAAGCAAGAGAGTGCTTTTGACCAGAAGAGTGGACACTTGGTTTTGGGCTGAGTGCAGTTGTAAACTGCTTCTTCAACGCATTTCAAAGTTCTCTGTGCTTGGTGCTGGGTAAGGGCATTTGTCTGAGGTGATGTGTACCTTCCTTTCAAAATTATAACATTTAGCCGATGTGCTGTCTGAAGTGTTTTCAGTCTGCCTCTGCAGCGTGACTCACACATACAAGACTTGGGCATTATAGTGACTGTCACTTGGAGGTGAGGAATAGTGCTGCTTCTCCAGCAGCCTCCCCCCACTTCCATGTCTAAACAGAGCGAATATCACAAAGTAGAAAACTACCTAAACGACATGCCTCTCCCACCAACCATGCTGTCTTCCGTGCATTGTTCCCATTAGTTTGTGATTCCCCTGACAGAGAGGCAGAACAGGCCTTTGCAGAGTGTAGACTCTGGGCGCAGACACTGAGCACAGACTGATGTCAGGCAGCAGGACCCGCATGGAGAAGCTGTGTGCCTCCCATTACCATGCAGGAGAAGTGTCAAAGACCGTACTTTATTCTGACAACCACTAAGTCTCCAAGAATGGTTTAGACAGATGACTTTAGAGAATCTCCTTTTAGAAACTATTTCATTAATAATGGATGAGCTGAATAAGAAATACACATATAGATGCCTGTGAAACGTTCTCTGACAAAGGCAGCTAACATCATTTGTTCTTGTGCAG
Seq C2 exon
GATGAGCAAGAGCTGGAGCCTCCAGTCAGTCTTGCCAGCTGGGATATTGAGAAAGCAGCAGTCTTTTCTATCAACATCTCCGATCTCAGTAACAAATTTCGCATCCTGAAACTGCTTCCTGCCCTCACAACACTGACAAACCATAACCGATATTTAATTGACTCCGGAAACGAAGATGGTTTCTTTAGAATCAATAAGAAGGACGGAATAAGTTACCTTCATTTCACAAAGAAGAAGCCAGTGCCTGGAAACTATTCATTACAAATCAGTAGTATTCCACTCTATAAAAAGAAGGAACTTAACCAGCTTGAAGAGAAACATGACAAAGACTACCTCAGTGGTGAGCTGGGAGATAACCTGAAAATGAAAATTCAGATATTGCTTCATTAATTCATCAACCAAAGACCAAATAATTAAACCAAAGATAGATAGGTAGGACTGAATATTCCTCCCAATCAGATTCTCCATATCATAGGTACAATCTTACATGAGTACATTTGTATGAAGGAGCACTATTATATTAATACATAAACAAGGTACAGGATGAATACCCTAGCTCAAAACAACCACTTTCTCAGGCTTTTAACTGTAGCTGAGCTACCTTGATATGTTGAATCTTGAAAACTGGGACTTTTGCCTTTGGAAGTTGGCCACTGATGCTGAGACACGTCATCATTTCAGCAGAGGTACAAGAATGTGCTTTCAACTGATGGACAGCTCTATTTTTGTAATTCTTAAACTTCGCTTCTCCAACTACAACTTACTAGGTCAGCCATTTATGATATCCATTTGGTGCTAGTAAATTTTCAACCTAGATTTATAAATGCACTGTAATATTTACACAACTTAGAAGCCAAAATTGCCATTATTCAGTCTAAATACTTCAATCAACCAAAGTTAGCTCAGTAGTTTATCTCAGTTATGCCTATAATACATTACATGTAAATTAAGTGTGTGTATACTGTAATCATGCTATTTTTATCAATGAAGCATTTGTAAACTAGATTAATAATACCCTTAATGTGAGGGTTTGTAATGGTGCTTATAAGACCAACTACTTGTTAACTGTATACACAAACCTGATGATAAAGTTTCTGTGACTTGCCAAAATGCACTGAGGTCAGTAGGGACCATTAAACATTCTCAAAAGTCAGATGACAATCAGTGCCATCCTACGCCATGACATTATGTAACATGTCAAGAGTACCCATAGTCATTCATATCAGCAAGGGTTCAATGTCATAAATGTCACAATAAAACAGTTTTTTTTTTAGTTTATTCTGTGGCTTTGTGTTCTTGCTGAAAGTGATAAACCGAATTCTTACATTTCAGGCATTTTTGGTAGGGTTTGTTGTCTGTATGTGTGCACAGGTGATTTCTTCTTGAAGGCACGCTGCTACCATTTGTTCACTCTTCGTGCAAAGGAAGAACAAAGGAAATACAGAAAGCTTCGCAAATCTAAGCAGCAGTGGAACTCTAACATAATTGTGTGGCTCCAGAAAGTGCGTTAGAACATTTCTGATGACTTTACCTGAATAATGAAGTCAGTCAGTAACTTTGACGGCCAGAGCATGCAGAAGTGGATGATAAGTCACTGTACAGAAAAAAAAAAATCCACATTTAATCATTTGAAAAGTCATTTGCTAAAACTGCCTTGTTTTACATATTCAATTCTTTTACCCCTACTTCTATAGCTGTTCTCAAGTAATCTAAGACTGATCACAAAGGCATAACCCAATACCAAAAGCCATCGGTTGTAGATGCATTTTAATGTGGAAGGAGTTGCTCAATGATGCCGGTGTTCTCATATGCTCAAGTGCTGCAGTACATCTTTTAGCAGCAGCAGAACATTCTGATGCTTCAAAATCTGGGGGCAGAAATGGAGCAAATGGTGTCACTGAAAATACTGATTGGGTTGCATTGTAATTGATAGAGGGAACCTACACTGAGCTATACTCATTTTGAAAAGGAAATGCACTGTAACAATTTACCCCCAATTGTACTGTTCTCTGTAATTCAACTTCACTCTCTTGGATTTCTTTCTGCTTAACAAATACAGCTAAGCAGAATGGAGCTGGTGCATGTGCACAGGGTTACCGTGATATCTATAATAGACTGTGTCTGGATTTTTCATGTTGGTGTGCCAAAACCTTAAGTGGTGTTTTTTTCCCATGTCTTGTGTAACTATGGCAAAATATAATCAAAGCCTTACAGTTGTATGTGCCACTTCAACCTCAGCAGGTTGGGATTGTTTTTTCAGTGTGTAAGATTGTATGGTTTCTGGTTAAAGTGTATGGTTTGGGTATTCTCTCTCCAGCCCTCAAATATTGAGAGGAACTGAGAAGAATGGTTTCATAAAGAGCTATCAGGACTCTGTCAAGTGGTGTTGGTTTCACATTTAAGCTGCCTAATAACACCTTAATATGCTAAAACCTCCTTGATGGTATTCCAGCAGCCCCTGCACTGTCTGCACAGCTCTGCAAGTCATCTTTGTTGCGCTGCAGAAATAAGGACAGATGAGAGTATTGTTGTTTTGTCATATGGGGAGGAGACCAATTTGAAGTAGTTCTATCCTTCCATTGACTAAAAGATAATTTTCAAATAATTCCAATATGATTTTGACAGCATCTCTTTTAGAGGTTTAAAGATGCAAAGCCCAATCTTGCCTGTCAGTTTTAGTTGTCATATATGTATAATTATTTACATTAGCTTGAATTTCTGCAGTTTTCTTGAACTCTCAGCAAAACACAAAGGTTGCATGAAAACATTGCATGAGACCTGTAGTTAAAAAGTGGTTTTAACCTATAAATGTGATTTACAGTATTTTCCTGTGTTCAATTTGACAGTGGGATCCCAGAGACTCTAAGCACTGGGTACACTAGAGGTTCTTTTCCAATGTGCATGCTTTTGCAATTAAAAGCTATTTTTCAAATTCAAGGAAATGATGAAATATGTGAGATAACCCCATGGCTTCCCCCTGTCGCAGCCATGCACATGACTGGACATAGATGCATGCATAAATGTAATTTTTGGTTAAATGTTGAACAAAGATGGCTTCTGACTGTGCATATCAAATCGTTCTCGTTGTGTATTGTAACAGTATCTTGTAAACTTAATGGCTGACATGTATTTTGGCAGAACGTGGCTGTTTCCACAGTCTCTCATTTACGCAGACTTTCAAAGGACCTGAAGTGTTTACTTTCTTACAGCAGGTCTCAGTGGGTCACACTCAGGTTTTGTCTAAAATAAATATTCTACACTGTGATTCAAGTTCAGCTTCGTGCTTTGGAAGAGCTGATCTGGACAAGACTCCTGAGCACAGAGAGGCCTGGGCTGTTTGGAGAGCAAGACAGACACCACAGCCATTGCCTAACAGCTGCCTACAGCTTCCCCATCCGTGTTTGAGCACTTCTGGTCCCTGCTGGCAGCACTGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000007955:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(5.1=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]