MmuINT0062918 @ mm10
Intron Retention
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125300594-125303260:-
Coord C1 exon
chr2:125303086-125303260
Coord A exon
chr2:125301976-125303085
Coord C2 exon
chr2:125300594-125301975
Length
1110 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
ATTTCCATGTGTCTTTCTAGGAC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GCATTGTGTTTCTGGAATGGGCATGGGCCGAGGCGGCCCAGAGCCACCTGCCAGCAGCGAGATGGACGACAACTCACTGTCCCCAGAGGCCTGCTATGAGTGTAAGATCAACGGCTACCCAAAACGAGGCCGGAAACGGAGAAGCACGAACGAAACGGATGCCTCCGACATCCAG
Seq A exon
GTATATCAGGGTCTCCTTGTCTGCAGATACCTAAGGGCCCTGAGGCTTCTATGCTTTCCTCCAAGGACACCTCCAAGAGTGAACAGTCTCCCCAGACAGAAAGCCCAGTCATTCTCCTGGCTTTAGCAGTATTTTACAAGAGGCCATGGGGTTTGGGGTTTGTTTTATTGTATTTATTTATTTTGGCTGCCTCTTGAGAGCGGCAGTTTGACAGGTTTCATGCTCTTGCTCATTTCCTCCGTCTCACCAAGAAGAAAGTCAAACGCCTACCCGGTGTCTGCAGACAGGACAAGGTCTGAAGTCAAGGATAGCAAGTGGGCAGAATGGCATGCACATGTGGTGTTCCCCACGCGGAGGCCAAGGTGTAGAAAGGAAAGAGCCATAAGGCGTGGTGGCGGGAGAAGGACTTGACTGACAGGAACATAGGATGCTATGTAAAGTCAGGAATGCATTCATTCACCCAGATCTCTGGCTCCAGGCTGGGAGCATCTAGTCCACGTGGTCCCAAAGAGGCAAGCAGAAAGCTCAGTGAGATGTTAGCAGCTCATCACAGCAGGGATGTGTGTCCATAGGTGTGTCCTTTAGAAGAGTTGGTTTCCCGTCAGTGAACAAACTTGAATTAGCCGTGTTCTGAGTCTGAGTATTCGTCCTACAACCCACCTGCTGTGGTTTGGGAAAGGAGATAAGTCTTTGAAAAGAAAACAAACCTATGAAGCAAGCTTTAAAAAAAAAAATCACTGCGTCTGAGTCACCTGGTAGGCTTGTTAGAATGGTGTGCTGGGAAAAGCCCCAGGAATTCTAATCCCAGGGGTCTGGGAGGTGACAGGAATTTGCATGTCTAATGGTTTCCAGGCATGCCAGGCTGCTGGTTCAGGGACCACACTTTGAGACCTACTGAGAGACTCTGCTCCAGTACAACCTGGCTTCCTGCCATCTATTTATATTTTTGAGAATACATCTGTGGCTTAGGCAAAGTGCCTACTAGCTTTGCCTTTTCAGTTTAACATACTGCATGAGCAGAAAACTGTGTTTGGCTTGAGACTTGAGTGGCTTTTTCTTTAGCATGAGAATACTTAGTGGGATTTAACCCATTTCCATGTGTCTTTCTAG
Seq C2 exon
GACGGGTCTGAGATGGAAGCCAACGTGAGCCTCGCCAGCTGGGATGTGGAGAAGCCGGCTAGCTTTGCTTTCAATATTTCCCATGTCAATAACAAGGTCCGAATCCTAGAGCTCCTGCCGGCCCTCACAACTCTGATGAACCACAACAGATACTTGATTGAATCTGGAAATGAAGATGGCTTCTTTAAAATCAACCAGAAAGAAGGGGTCAGCTACCTCCACTTCACGAAGAAGAAGCCGGTGGCTGGGACCTACTCCTTACAAATCAGCAGCACCCCACTTTATAAAAAGAAAGAACTTAACCAGTTAGAAGACAGATATGACAAAGACTACCTCAGTGGTGAACTGGGCGATAACCTGAAGATGAAAATTCAGATCTTGCTGCATTAATTCACCATCCAGAGACCAAATAATTAAATGAAAAAGCAACCTTAGGCAGGTAGAATTATATTTTCCCCAAGCCAGAACCTTCACATCATGGTACAATTGTTCACCGAGTCGATCTGTATAAATGAGCACCACTCTTGAATGGCAACACCCAGGTACAGTGATGATCCTAGTTCAACCAACCACTTTCTCAGGCTTCTCGTGAGTAGCTCAGCTACCCTGTCATGCGTATTGATTCCTGAAAACTGGGACATGAATATCCGCTGAGGTTGGCCATTCACGCCGATGGGCTATCTTCCCAGCCTCCGCACAGGAACGCGCTTCCATCTGATGGACTGTTCCGCGTTGGTCTTCAGATCTTGAAACTTTGCTTCTCCGAGTGCAAGCAGTAGGTTTCTGTTGTCTGTTTGGTGCTAGTAAATTCTCAAAATAGATTTATTGATGCACTGTAATAAAGACACGAGTTAGGAACCAAATTGCCAAGTACTCAGTTCAAATACTTCATTTCAATCAACCAAAGTTAGTTCAGTAGCTTATCTCACTTATGAGTATGGTGCAGTACATGTAAATTAAGTGTGTGTACACTGTAACGTGCTATTTTTATCATTGAAACATTTATAAACTACAATAATAAAGCCCTTAATGTGAGGGTTTGTAATGGTGCTTATTAAGACCAAAGACTTGTTAAACATCTACACCAAATGGTAGTGGATTCTCTGAGACTGGCCCACTTGTGCACTGAGGTTGGGGAGGACAAGGAAGCAGCCTCAGCCACCAGAGGATCACCACCGCATCCTCCATCACACAGCATGTGCAATACGCCAAAATCACTCTCAGTCATTCCTGTCAACAAGGGGTTAATGTCATGATGTCACAATAAAGTGATCCTCCCCTCCCTCCCCATTTTAGTTTACACCTTGGTTTTATGTTCTTGTGTGGATTAAGGCTGGAGGGGCCTTTCTGGAGGTGAAATAAAGTCTCCTGGGTTTAAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204:ENSMUST00000028633:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(5.1=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGGCTACCCAAAACGAG
R:
GTGGGGTGCTGCTGATTTGTA
Band lengths:
348-1458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types