GgaINT0027950 @ galGal3
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11673560-11676694:-
Coord C1 exon
chr10:11676520-11676694
Coord A exon
chr10:11674131-11676519
Coord C2 exon
chr10:11673560-11674130
Length
2389 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CATCATTTGTTCTTGTGCAGGAT
3' ss Score
9.54
Exon sequences
Seq C1 exon
ACACTGTGTTTCTGGAGTTGGGCTAGGCAAAGGTCAAGGACAAGAGCTTTCACTCAGCGGAGAAATGGATGACAACTCCCTGTCTCCAGAAGCTTGCTATGAATGTAAAATCAATGGCTATCCCAAGAGAGGAAGGAAGCGCAGAAGTACTAATGAAACTGCAAATGAAGCAGAG
Seq A exon
GTAATTGACCCTCTGGGGAGGGAAAGGGTTTGGTGTTATCTTGTGAAAGGCAGTCTTGGATTGATGAATGCCAAGAAGCAATCGCATGGGAAAAAAATATACCCCAAAGTAAACAAAGGTCCAGGTTTTGGACATCAGGTGTCTGGGACAGGGCTTTCTGAAATTGTTCTGTTACTGTCAGGCGAAGGTTGTCCCCTGCAGCCCTTTGATTCCTACTACCTAGGGTGCATCCAACACTAAAATAAACACCCACCCAGCTATCCTGAGCGCAGTGCTCTCACTTGCAAAACAGGCTCTTGATTTTAGAGGGTGACAGGTATGTAAAACATTTGTGTGACCTTGTGGCCAGAAAGGCAGTATGTGTTGGACAGGGTGGATGGTGACCCCTCCAAGCAGGACCATGTTGTATCTGGGTCTGGAGCTCACACCAAAGCAAACACAGAGCTCTGGATGTGAACATTGGACTTCGAGGGAGCTGCAGCTCTTCCTGGGACTCGTCCACACTCTCACAGTCACTCAGGCTGCCAGCCTGGGGGCAAAACTGTTGGTGAGGTCATGTATTCTGCTCATTGCTGGTCCAGGCAGACTTAGGGAGGCTGAGCTTCATCTGTCATCACCTGCAAGTTGCTAGGGACTGAGGCAGGTTTCTGTTTGCCTCTCAGTGGGATAACTGTGTGCCAGTGAATGTGTAAAACCTATTGCAGTGCTCACCCAACTCCACTTCTTCCTAGCTGTTGTCATTAGTTTCTTTTATATTAACCAAACATTAACAAGTGGTTTCAGCACCCATATTTATATGAAAACTTATCTGCTGTGTGACAGGTTTTATCTTTCTGTGAAGAGGAAGGCATCCTTTTTCATTCTGGAGGGAGATATTCATTCATCCTGGAGGGAGATATTTTTCCTTCATTCTTGGCAAATGTTTTGAGAAATAACATTAATGAAAAGTAAATCCTTTACCAAACCCCACTTGCTGGAGTTTGTTCTGTATTGCTCACTGGGACACAATGTGATCGAGGTGGTTTTAATTGTGTTTGTTCTTCCACTGAGCTTGCCACACATTGTCCAAAAGTCTCTCTTCTCCCAGCATGAATGCAGAAGTTGTGGTAGAAGTGCAATCTTATAATAGTCCCTTGCATTACCTGAGGCTTATTTTATCTTGGAATACAAGGTCAGAATGCCCAGTTGAGTCATTCAGTCCAATGTCCTGCACAAGTCACTACACTTAAATCTTTTTCCCACCAATTAAATGTAGACTTTACAAACAATAAACAGCTTGCAGGAGAAATGTCCCCAAGTCCACAGTCATTCAACTTCTCACTTCTTCATCCATTCTATGGTGACAGTGATGTTAGGGATGAAGTGTTCTGACCTGATCTGGCCAGAGAAGCAGCAGGTCATGGGAGGTGTCAACTGCAGTATTTGCCATTCAGCTAAATGTATGTGTCCACGTATGTAAATGTGTTTCATTCAGAATTTAATCCAGAGACACTGAACACTCTTGTACAAAAGTGCTGTTAGACTGTCACTACCCTGAGCAGCCATGTGTGTTCTCTGCTCACATGTATATGTGATAGAGCTTGCTTTTCCATACATGAATACAGCAGATCCAGGGGCAAGTTAGCTGTTTCTATTCTGTGCTCAGTGTATGGCTCTGCTAACTCAGGAAAGCAAGAGAGTTCTTTTGACCAGAAGAGTGGACACTTGGTTTTGGGCTGAGTGCAGTTGTAAACTGCTTCTTCAACACATTTCAAAGTTCTCTGTGCTTGGTGCTGGGTAAGGGCATTTGTCTGAGGTGATGTGTACCTTCCTTTCAAAATTATAACATTTAGCCGATGTGCTATCTGAAGTGTTTTCAGTCTGCCTCTGCAGCGTGACTCACACATACAAGACTTGGGAATTATAGTGACTGTCACTTGGAGGTGAGGAGTAGTGCTGCTTCTCCAGCAGCCTCCCCCCACTTCCATATCTAAACAGAGCGAATATCACAAAGTAGAAAACTACCTAAACGACATGCCTCTCCCACCAACCATGCTGTCTTCCGTGCATTGTTCCCATTAGTTTGTGATTCCCCCTGACAGAGAGGCAGAACAGGCCTTTGCAGAGTGTAGACTCTGGGCGCAGACACTGAGCACAGACTGATGTCAGGCAGCAGGACCCGCATGGAGAAGCTGTGTGCCTCCCATTACCATGCAGGAGAAGTGTCAAAGACCGTACTTTATTCTGACAACCACTAAGTCTCCAAGAATGGTTTAGACAGATGACTTTAGAGAATCTCCTTTTAGAAACTATTTCATTAATAATGGATGAGCTGAATAAGAAATACACATATAGATGCCTGTGAAACGTTCTCTGACAAAGGCAGCTAACATCATTTGTTCTTGTGCAG
Seq C2 exon
GATGAGCAAGAGCTGGAGCCTCCAGTCAGTCTTGCCAGCTGGGATATTGAGAAAGCAGCAGTCTTTTCTATCAACATCTCCGATCTCAGTAACAAATTTCGCATCCTGAAACTGCTTCCTGCCCTCACAACACTGACAAACCATAACCGATATTTAATTGACTCCGGAAACGAAGATGGTTTCTTTAGAATCAATAAGAAGGACGGAATAAGTTACCTTCATTTCACAAAGAAGAAGCCAGTGCCTGGAAACTATTCATTACAAATCAGTAGTATTCCACTCTATAAAAAGAAGGAACTTAACCAGCTTGAAGAGAAACATGACAAAGACTACCTCAGTGGTGAGCTGGGAGATAACCTGAAAATGAAAATTCAGATATTGCTTCATTAATTCATCAACCAAAGACCAAATAATTAAACCAAAGATAGATAGGTAGGACTGAATATTCCTCCCAATCAGATTCTCCATATCATAGGTACAATCTTACATGAGTACATTTGTATGAAGGAGCACTATTATATTAATACATAAACAAGGTACAGGATGAATACCCTAGCTCAAAACAACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000038883:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]