BtaINT0063159 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45517791-45518219:+
Coord C1 exon
chr19:45517791-45517920
Coord A exon
chr19:45517921-45518055
Coord C2 exon
chr19:45518056-45518219
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTGTCCCACCTCCCACTCAGTGT
3' ss Score
6.84
Exon sequences
Seq C1 exon
CTGTTGGAGATGAAGTCGACTGACCGCAAGCAGACGCTGCTGCATTACCTGGTGAAGGTCATTGCTGAAAAGTACCCACAGCTCACAGGTTTCCACAGCGACCTGCACTTTCTGGACAAGGCCGGCTCAG
Seq A exon
GTATGGGTGGGGGGTGGGGTTCAGCCCTGGGGATGGATACAGGTTGGGAGAGAGCCAGGGGAGCTCAGGACATAATGGGATGGGAATGCTGCCTCTCTGATTCTTTGCTTCTCTACTGTCCCACCTCCCACTCAG
Seq C2 exon
TGTCCCTGGACAGCGTGCTGGGGGATGTCCGCTCCCTGCAGCGAGGCCTGGAGTTGACCCAGCGGGAGTTTGTGAGGCAGGATGACTGTGTGGTGCTCAAGGAGTTCCTGAGGGTCAACTCACCTGTCATGGATAAACTGCTGGCAGACAGCAAGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(11.7=100)
A:
NA
C2:
PF0218118=FH2=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGAAGTCGACTGACCGC
R:
CAGGTGAGTTGACCCTCAGGA
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development