MmuINT0065090 @ mm9
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103057730-103058162:+
Coord C1 exon
chr11:103057730-103057859
Coord A exon
chr11:103057860-103057998
Coord C2 exon
chr11:103057999-103058162
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTCTGTGGTGTCCCCTCCAGTGT
3' ss Score
9.1
Exon sequences
Seq C1 exon
TTGTTGGAGATGAAGTCGACCGACCGGAAACAGACGTTGTTGCACTACTTGGTGAAGGTCATTGCTGAGAAGTACCCACAGCTCACGGGTTTTCATAGTGATCTGCACTTTTTGGACAAGGCAGGCTCAG
Seq A exon
GTATGGGGCGCTGGGGTCTTGGGTGAGAGCAGGGAACTCAGTCCTTGGGCCCCTGACGTGGTTAGGAGGATGCAGGGGGGACTGTAGGATAGAACTGTGTGCATGCTGCCTTATCCCGACTCTGTGGTGTCCCCTCCAG
Seq C2 exon
TGTCCCTGGACAGCGTACTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGCTGACGCAGAGAGAGTTTGTGCGGCAAGATGACTGCCTGGTGCTCAAGGAGTTCCTAAGGGCCAACTCTCCCACCATGGACAAGTTGCTGGCAGACAGCAAGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-Fmnl1:NM_001077698:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(11.7=100)
A:
NA
C2:
PF0218118=FH2=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATGAAGTCGACCGACC
R:
GGGAGAGTTGGCCCTTAGGAA
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: