RnoINT0061619 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91279069-91279502:+
Coord C1 exon
chr10:91279069-91279198
Coord A exon
chr10:91279199-91279338
Coord C2 exon
chr10:91279339-91279502
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTCTGTGCTGTCCACTCCAGTGT
3' ss Score
8.41
Exon sequences
Seq C1 exon
TTGTTGGAGATGAAGTCGACTGACCGGAAACAGACGTTGCTGCATTACTTGGTGAAGGTCATTGCTGAGAAGTACCCACAGCTCACGGGCTTTCATAGCGACCTGCACTTCTTGGATAAAGCAGGCTCAG
Seq A exon
GTATGGGGTGCTGGGGTCTTGGTTAGGAGCAGGGAGCTCAGTCCTTGGGCTACTACTGATGTGGTTAGGAGGAAGCAAGGGGGACTGGAGGATAACTGTATGCATGCTGCCTTCTCCTGACTCTGTGCTGTCCACTCCAG
Seq C2 exon
TGTCCCTGGACAGTGTGCTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGTTGACACAAAGAGAGTTTGTGCGGCAAGATGACTGCCTGGTGCTCAAAGAATTCCTGAGGGCTAACTCTCCCACCATGGACAAGCTACTGGCAGACAGCAAGACAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(11.7=100)
A:
NA
C2:
PF0218118=FH2=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGACTGACCGGAAACAGAC
R:
ATGGTGGGAGAGTTAGCCCTC
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]