GgaINT0143093 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1348987-1349336:+
Coord C1 exon
chr27:1348987-1349062
Coord A exon
chr27:1349063-1349172
Coord C2 exon
chr27:1349173-1349336
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
GCTGACTGCCCTCCCCGCAGTGT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCGGTGATCACGGAGAAGTACCCCGAGCTGACCGGCTTCCACAGCGAGCTGCATTTCCTTGACAAGGCGGGCACAG
Seq A exon
GTAGCACCTGTGGGCATGGGGCTGGGGGCCATGGTGGGTACAGCCCCCACCTGGGGACCGACTGAGCCCGTCCTGATCCTGGAGCTGGTTGCTGACTGCCCTCCCCGCAG
Seq C2 exon
TGTCCCTGGACGGCGTGTTGCAGGACGTGCGGAGCCTGCAACAGGGCATGGAGCTCACCCGCAAGGAGTTCATGCGGCAGGATGACAGCCTTGTGCTCAAGGAGTTCCTCAAGGCCAACACGGAGCTGATGGAGAAGCTGCAGGCTGACAGCAAAACTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.0=100)
A:
NA
C2:
PF0218118=FH2=PD(16.8=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGATCACGGAGAAGTAC
R:
AGTTTTGCTGTCAGCCTGCAG
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]