BtaINT0063162 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45518721-45519209:+
Coord C1 exon
chr19:45518721-45518816
Coord A exon
chr19:45518817-45519088
Coord C2 exon
chr19:45519089-45519209
Length
272 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TACCCTCGCCCTCCCCCCAGTCC
3' ss Score
10.21
Exon sequences
Seq C1 exon
AAAGCTGAGCAGGAGGTGGAACAGTGGAAGAAGGAAGCAGCTGCCCAGGAGGCAGGCACTGACACTGCAGGGAAAGGGGAGCCCCAAGCACCCAAG
Seq A exon
GTAGGCAACTATTGCTGAATTTGGTACTGGGATCCAGCGATGCTGATGCTTGGTATCTTCATCCCAAAGATCTGGTCCTCCTCTGCATCCTCGTTTTTATGGACTGACCCTACTTAAGGCCAGGATGCCTCTGTAGCCTGTGGTGGGGAATGGGTTCCTTTTCCTCATGCCAGCTGTTATTGTGGGGGACCAGGCAGGTGGTTTAGGGTTTAGTGGCACAGGGGGACAGAGGATCCTGGAGCTGGAGTTATATACCCTCGCCCTCCCCCCAG
Seq C2 exon
TCCCCTCCCAAGGTCCGGCGGCAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCAGAAAGAGCCACTCATCTATGAGGGTGACCGTGATGGGGCCATTGAAGATATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=NA C2=0.699
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGAGCAGGAGGTGGAA
R:
GTGATGATATCTTCAATGGCCCCA
Band lengths:
215-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development