HsaINT0065112 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43323245-43323697:+
Coord C1 exon
chr17:43323245-43323340
Coord A exon
chr17:43323341-43323576
Coord C2 exon
chr17:43323577-43323697
Length
236 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GAGCTATAAATTCCCCCTAGTCA
3' ss Score
4.18
Exon sequences
Seq C1 exon
AAAGCTGAGCAGGAGGTGGAACAGTGGAAAAAAGAAGCCGCTGCCCAGGAGGCAGGCGCTGATACCCCGGGCAAAGGGGAGCCCCCAGCACCCAAG
Seq A exon
GTAGGCAACTGCTCCTGGGCTTGGTACTGGGCTGCAGGGATGCATGGCATCTCATCACCCTCTGGTGCCACCCCCACACCCTCACTGTTACAGACTGACCCTGCCCCAGGAGCCTGGGATGGGAAAGGGTTCTTTCTGCTCAAGCCAGCTGTCCTTGCTGTGGGGGACCAGGCAGATATTCCAGGGTTTTGGTGATGGGGAGGCATCCTGGAGCTGGAGCTATAAATTCCCCCTAG
Seq C2 exon
TCACCGCCAAAGGCCCGGCGGCCACAGATGGACCTCATCTCTGAGCTGAAACGGAGGCAGCAGAAGGAGCCACTCATTTATGAGAGCGACCGTGATGGGGCCATTGAAGACATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGAGCAGGAGGTGGAA
R:
ATGATGTCTTCAATGGCCCCA
Band lengths:
212-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)