HsaINT0065112 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45245878-45246330:+
Coord C1 exon
chr17:45245878-45245973
Coord A exon
chr17:45245974-45246209
Coord C2 exon
chr17:45246210-45246330
Length
236 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GAGCTATAAATTCCCCCTAGTCA
3' ss Score
4.18
Exon sequences
Seq C1 exon
AAAGCTGAGCAGGAGGTGGAACAGTGGAAAAAAGAAGCCGCTGCCCAGGAGGCAGGCGCTGATACCCCGGGCAAAGGGGAGCCCCCAGCACCCAAG
Seq A exon
GTAGGCAACTGCTCCTGGGCTTGGTACTGGGCTGCAGGGATGCATGGCATCTCATCACCCTCTGGTGCCACCCCCACACCCTCACTGTTACAGACTGACCCTGCCCCAGGAGCCTGGGATGGGAAAGGGTTCTTTCTGCTCAAGCCAGCTGTCCTTGCTGTGGGGGACCAGGCAGATATTCCAGGGTTTTGGTGATGGGGAGGCATCCTGGAGCTGGAGCTATAAATTCCCCCTAG
Seq C2 exon
TCACCGCCAAAGGCCCGGCGGCCACAGATGGACCTCATCTCTGAGCTGAAACGGAGGCAGCAGAAGGAGCCACTCATTTATGAGAGCGACCGTGATGGGGCCATTGAAGACATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=NA C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGAGCAGGAGGTGGAA
R:
ATGATGTCTTCAATGGCCCCA
Band lengths:
212-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development