GgaINT0143096 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1350418-1350861:+
Coord C1 exon
chr27:1350418-1350516
Coord A exon
chr27:1350517-1350737
Coord C2 exon
chr27:1350738-1350861
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTCTGCTGTCCCCTCTGCAGTCA
3' ss Score
9.33
Exon sequences
Seq C1 exon
AAAGCAGAGCAGGACATCGAGCTGTGGAAGAAACAAGAGGCTGCGGCCAAGGAGGCAGAGTCCAGCCAACCTGGCAGTGGGGAGCAGCTTGACCTGAAG
Seq A exon
GTACCTGGTGCTGGGACAGGGCCCCGCAGCACCGCTGCACCAGCAAACCCCACGCAGCCACAGCCAGGAGGCAGCAGCCCGGATCTGTCTGCCCTCGTGGGGCGGCCTTGCTGCACCCAGAGCACACTGCCTCTGGGAGAGAGCAAAAGGCTTCTTCCAGCTGGGCTGGGGGAGATGGGTAGCATGGGGATGCTCTGCTCACTCTGCTGTCCCCTCTGCAG
Seq C2 exon
TCACCATTCCAGAAAGCCAAGCGGCAGCAGATGGACATGATTGCTGAGCTGAAGAAGAAGCAGATGGTGAAGGAGCCACTCATTTATGAAGGCAAAGACGGGGCCATCGAGGACATTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGAGCAGGACATCGAG
R:
AAATAATGTCCTCGATGGCCCC
Band lengths:
220-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]