RnoINT0061623 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91279954-91280414:+
Coord C1 exon
chr10:91279954-91280034
Coord A exon
chr10:91280035-91280293
Coord C2 exon
chr10:91280294-91280414
Length
259 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
AGAACTGTTCATCTCCCCAGTCT
3' ss Score
5.86
Exon sequences
Seq C1 exon
AAAGCAGAGCAGGAGGTGGAACAATGGAAGAAGGAAGCAGCCGCGGACACCTCAGGCAGGGAAGAGCCTCCAGCACCCAAG
Seq A exon
GTAGGCGGCTGTTCCCAGGTCTGGGACTGGGGTTCAGGAACTTGTAGCATCCCCTTCACCCTCTTGTCTCAGCCCTACCCCTTCAGGGTTGGGACAGATTCTGCCCCAGGACAAGGACAGTGCCCCAGGAGCTAGGGGAGGAAGCAGGTGTAGCTTCCTTCTGCCTTAGCTGGTTATCCTCACCGTGAGGAGCTACACAGATGTTCCAGAGTGGGTGGGATGAGAAGTATCCTAAAGTTAGAACTGTTCATCTCCCCAG
Seq C2 exon
TCTCCTCCCAAGGCCAGGCGACAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCTGAAAGAACCACTCATCTATGAGAGTGACCGAGATGGGGCCATTGAAGACATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGAGCAGGAGGTGGAA
R:
TGATGTCTTCAATGGCCCCAT
Band lengths:
196-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]