BtaINT0063183 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43674493-43675356:-
Coord C1 exon
chr2:43675044-43675356
Coord A exon
chr2:43674706-43675043
Coord C2 exon
chr2:43674493-43674705
Length
338 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGTTTCTTTTCTTTTGCCAGTGC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GAAATCTACAAAGATGCAAATACCCAGGTTCACACATTAAGGAAAATGGTCAAAGAGAAAGAAGAAGCCATTCAAAGACAGTCTACCCTAGAAAAAAAGATTCATGAGCTGGAGAAACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGGGGACATCGCCATACTCCCTGTCGTGGCTTCTGGCACATTGCCCACAGGGTCCGAAGTGGCGGTGGGTAACTTCGTGGGACCAGTAATGGGGGCCCCCTCCTCGGGACCCTTGCCTCCTCCTCCCCCACCACTACCTCTGTCGTCAGATGCACCTGAAGCTG
Seq A exon
GTAAGAAGCCTTGGCAGGAGAACTGAGGTCGTACTGGGATATTTGTATTTCTTCTTTTACCTACTGTTAATTTATGTCCTCTGTCTGCTCTTGTTTGCATGCTCTTGTATTTATTTTTAAAAACTGTTTACATTTTGAGATTAAAGTTGTAAGTCTTTCATTTCGTATGTTGTAGAATACTCCCCATTTGTCACTGAGGACATTTTGTAATCTGGAAAAAAAAAAAGCATTTATCCTTTTCAGTGTTTTGTTTTCAGTTACTTTATGTACACACGGCATGTTGCAGGAGAAACCATTCCTCTGTTTTAAAAGCCCATTTGTTTCTTTTCTTTTGCCAG
Seq C2 exon
TGCAAAATGGCCCAGCAACACCACCTGTACCACCCCCGCCCCCGCCTCCGCCTCCTCCCCCGCCGCCTCCTCCACCTCCTCCCCCGCCCCCTCTCCCAGGTCCTGCAGCTGAGACCCTGCCTGCTCCTCCCTTACCACCCCCACCTCCTCCTTCTGCACCCCCGCTGCCTGGGACGTCTTCACCCACAGTGGTTTTCAACTCAGGATTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.938
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(21.0=41.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAGAAACAAGGGACCA
R:
GAGGAGGTGGGGGTGGTAAG
Band lengths:
357-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]