RnoINT0061637 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38650830-38651943:+
Coord C1 exon
chr3:38650830-38651142
Coord A exon
chr3:38651143-38651757
Coord C2 exon
chr3:38651758-38651943
Length
615 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATTTTGTTCTTTTTTTCCAGCTC
3' ss Score
10.19
Exon sequences
Seq C1 exon
GAAATCTACAAAGACGCAAACACCCAAGTTCACACATTAAGAAAAATGGTCAAAGAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCTGGAAAAAAAGATTCACGAACTGGAGAAACAAGGGACCATCAAAATTCAGAAGAAAGGGGACGGGGACATTGCCATACTGCCGGTTGTGGCCTCTGGCACGTTACCCATGGGGTCAGACCTAGCAGGGGGTAACTATGTGGGACCAGTTCCAGGGGCCGCCTCCTCAGGACCCTCAGTCCCTCCTCCCCCACCACTACCTCCGTCATCAGACACACCTGAAGCAG
Seq A exon
GTAAGATGCCTGGGGGGAGGGGTGGAGCTCCCCAGTGCTTCATAAGCACTTTCCCTTTTCTTAAGAAAGGTGCCATTTTGAGGAGCTGGAGAAATGGCTTAGTGGTTAAGAGCATTTACCGCTCTTCTAGACACCTGAGTATCTCCCAGCACTCATAGAGCATGTCTCACAACGACCTATGATGCCACCTCCAGAGGATCTGTCCTTGCCTCTGGCATCTGTAGGCACCATACTCACGTACACATCCTCGCACACACGAGATGCCATAGATTAAAACAAAAGTTGCATTCTGAGAATGATGTTGTGAATCTTGATGTCACTTATGCTATGACATTTCCTGGGTTCTCAGTAAGGAAATGTTACTGTTGCGTTTTGTTTTCTTGGGCCTTTTTACTTCATTTAAAAATTGTATTTGTTTGTTCTGCTTAGCGATGTGTATATGTGAGTGTATACCGAGGTGTGCTCGTAGAGATCAGAGTGACCTTTGCAGAGTCAGTTCTGGTCCCACTTTCATGTGGGTTCCCAGGATCTAACTAGCGTTACCTGACGAGCCATTTGGCCAGCCCAGTTTTCTCATGCCTTATGTGCACATGACATTTTGTTCTTTTTTTCCAG
Seq C2 exon
CTCAAAATGGACCAGCATCACCACCTATGTCCCCACCTCCACGCCTCCCCACCTCGCCCCCTCCACTCCCAGGTCCTGCAGCTGAGACTGTGCCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGTTGCCTGGGACTTCTTCACCTACAGTAGTTTTCAACTCAGGATTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.923
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(21.0=41.0),PF061486=COG2=PD(24.2=43.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAAACACCCAAGTTCACA
R:
GTGGAGGTGGGGACATAGGTG
Band lengths:
342-957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]